Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3429 ATGAAGGATGCTTCCTCCTTCGCGCACAGCTCCTCAGTTGAAAaaAGAAGATTAACAATTGATTCAAACTCTGTAATGGCCAACCAAGATGAGGTTTCGGCAATCAAACGCATAAAATTGCATCTTCTAGGTGAACTCTCTCCAGTTGGGATCTTGTCTCAAAACCTTTGGTTTCACGAATCCAACCCATCGTCAATCTCAACCTCCCAATCACTCTCTTCCACTTCAGACTCTTCTTCCATTATGTCCGATTACTTCGGCAACCTTCTCGAATTCCCAAACAATAGTTCCACATCTTCATCGCAAAATCAGACCAATATCTTTGAATACGAGTCGAAACCCCAAGGAATTGACCTCCCACCGCCAAAATTCCAAATCGAAAATTCACAATCGGACACCAAATCCGAATCGAATTCACAGGGAAGCTCGCAGTCCAACGGTTGGGTGATGGATTTCGAGCCCAAATCACAAACATCGGAGAGAAAAGCCGTTTCGAATCGGAAACCGTCGTTGCAAATCTCGCTCCCGAGGAAAACAGAGTGGATCCAATTTGGGAAGGCAGATCAAGAAGAGGAGGTTGGAAACATGGCGGCGCAGAAGAATCcaaaagatgaagagaaaaaacACTACCGAGGGGTCCGGCAGAGACCGTGGGGCAAATTTGCGGCGGAGATCCGTGACCCGAACAAAAGAGGATCCAGGGTGTGGCTCGGGACCTTCGACACGGCTATCGAAGCCGCTAAAGCTTACGACCGAGCCGCGTTCAAGCTTCGCGGCTCCAAAGCCATCCTCAACTTTCCTTTGGATATAGCCACAACCGTTGGCGCCGCCGAGGGAAAACGCCGGCgtgaagaggaggaggaagctGTGGAAGTAAAGGAAGCGGTGAAGAAAGCGAAAACGACGGAATCTGAAGTGAACTGTATAAAGGACATTCCGTTAACGCCGTCTAGTTGGACGGGCTTCTGGGACAACGATATTAGCGGGATTTTCAGTGTGCCGCCGCTATCGCCGTTATCTCCGCACCCTTCTTTAGGTTATCCACGGCTTACTGTTGTGTGA 1062 0.4736 MKDASSFAHSSSVEKRRLTIDSNSVMANQDEVSAIKRIKLHLLGELSPVGILSQNLWFHESNPSSISTSQSLSSTSDSSSIMSDYFGNLLEFPNNSSTSSSQNQTNIFEYESKPQGIDLPPPKFQIENSQSDTKSESNSQGSSQSNGWVMDFEPKSQTSERKAVSNRKPSLQISLPRKTEWIQFGKADQEEEVGNMAAQKNPKDEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLDIATTVGAAEGKRRREEEEEAVEVKEAVKKAKTTESEVNCIKDIPLTPSSWTGFWDNDISGIFSVPPLSPLSPHPSLGYPRLTVV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3429 353 MobiDBLite consensus disorder prediction 112 150 - -
Sto6g3429 353 MobiDBLite consensus disorder prediction 124 150 - -
Sto6g3429 353 MobiDBLite consensus disorder prediction 194 213 - -
Sto6g3429 353 SUPERFAMILY DNA-binding domain 209 269 IPR016177 GO:0003677
Sto6g3429 353 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 29 338 - -
Sto6g3429 353 PRINTS Ethylene responsive element binding protein signature 210 221 IPR001471 GO:0003700|GO:0006355
Sto6g3429 353 PRINTS Ethylene responsive element binding protein signature 249 269 IPR001471 GO:0003700|GO:0006355
Sto6g3429 353 Coils Coil 282 302 - -
Sto6g3429 353 MobiDBLite consensus disorder prediction 197 212 - -
Sto6g3429 353 SMART rav1_2 209 273 IPR001471 GO:0003700|GO:0006355
Sto6g3429 353 Gene3D AP2/ERF domain 208 269 IPR036955 GO:0003700|GO:0006355
Sto6g3429 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 29 338 - -
Sto6g3429 353 Pfam AP2 domain 209 259 IPR001471 GO:0003700|GO:0006355
Sto6g3429 353 ProSiteProfiles AP2/ERF domain profile. 209 267 IPR001471 GO:0003700|GO:0006355
Sto6g3429 353 CDD AP2 208 267 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3429 Sto-Chr6 40083593 40084789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3429 26 353 AP2-EREBP Transcription Factor Family AT5G47230 44.477 3.48e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto6g3429 AP2 4.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3429 K09286 - gmx:100808173 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3429 6 40083593 40084789 Sto6g3429 6 40083593 40084789 ECH