Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3421 ATGGTTGAGAAGGAGGACTTGGGTTTGAGTCTTAGCTTAAGCTTCCCTCACAATCCTCCAAATCATCTCCACCTCAATCTCATGCCATCTTCCACTTCTTCCCCTTCTCCCTCTGCTTCTAATCTTCACAAACCCTCTTGGAATGACCCCTTAGCCTTCTCAGATCGAGATTCTGAAACATGCAGAGGCGAGGGTCGATCTTTCCTGCGAGGAATCGACGTGAATCGATTGCCTTCGGGGGTGGATTGCGAGGAGGAGGCAGGTGTTTCGTCTCCGAACAGCACGATCTCAAGCGTGAGCGGCAAGAGAAGCGAGAGAGAGGCCATCGGAGAAGAGCATGACTTGGACAGAGATTGCTCTCGCGGAATCAGTGATGAAGAAGACGGAGAAACCTCCAGAAAGAAGCTTAGGCTCTCCAAAGACCAATCCGCTATTCTCGAGGAAAGCTTCAAAGAGCACAATACTCTCAACCCCAAGCAAAAGTTGGCACTTGCGAAGCAGCTTGGGCTTCGACCAAGACAAGTTGAGGTGTGGTTCCAGAACAGAAGAGCAAGGACAAAGCTGAAGCAAACGGAGGTAGACTGCGAGTTCTTGAAAAGATGCTGCGAGAATCTAACGGAGGAGAATCGGCGGTTGCAGAAGGAGGTTCAGGAGCTGAGAGCACTGAAACTTTCCCCGCACCTCTACATGCAGATGACCCCACCCACCACTCTCACCATGTGCCCGTCGTGTGAGCGGGTGGCTGTGCCGCCGTACGCGCCTGCCGGAAACCGTCACCATCCCATGGCCCAAGCCCACCCTCGACCCATCCCCGTCGGCCCATGGGCCCATGCTGCTGCTCCTCACCGGCCCTTCGATGCTCTGCATCCCAGTGAAGCTTCCTTCTTGGCCCTTACAATGGAGGGGACGTCGGGGAGCAAAGGCGGGGACACCTTGGATGGAGACACGATTGAGCTGGAGGAAAAGAAGCATGTCACGGTGGAAGTGTCCAAGCATGCTCTGGTAGGGAAGGTATTAGCTCCAAAACCCTTAAATAGGAGAACGGTGAGGTCAATGCTGATAAGAAGTTGGGGCTTCCCTAAAGGGCTGCATATTGTGGACCTGCAAATGAACACGTTTCTATTCAACTTCAGTGAAGCGGATACTCCGAATCGCATTATGGAGGATGCTCCGTGGAGTGTTTTAGGTTACTTGGTGAGTTTACAAAGGTGGGTGCCTGAAGTCGCGATTCATGAGGTGGATTATGATCTAATTCCGTTTTGGGTCCAGATTCATGGTGCTCCTTTGAATGGGATATCGGAAAACAATGCTCGGCGAATAGCAGAAAGGATGGGTGAAGTTTTAACGGTAGAGAACCCCTTCATGGAGAACAAGATAGTGAGGGGTTTCATGAGAGCCAGAGTCATGGTGGATATCACGAAGACGTTTGCTACGGGGTTTTGGGTTCCGAGAGGAGAGCTGCCAAAAGTGTGGGTCACCTTGAGCTACGAGAAGCTGCAAGGATATTGCTATAACTGTGGATGCTTGGGTCACGAACAAAAAGATTGCAAGGAAAAAAGAGCCATGGCGATATGGGACCCCTCAAAGCCAAGATATGGCCCGACTTTAGGGGTGCCGCCTGTGAAACCGATGCACCTGGTGTTATCGGAGATGGGGATGAGGCAGAATAGGGAGGCGACGGAAGAAAGGAGTTCGGGAGCGTGGAGACACGCGCAAGCAGAAAGCGACAAACCAAGTGAAACAGTGGGGGAACTGGCTAGAGGAGGAGGCGGTAACGGTTTGCAAAAAGTAACCCCAGCAATACGTGAATTGCAACAGAGGAATTGGAGTGGAATGGCCCCTGACAAAAAGGACAATGAAGGTCGGGCGGAGGGGTACGATGCTGGAAGGACTGAGAAAATGGACGTGGAAAGGGATGGCATGGGAAAAGATGACGTGGAAAGACAAGAACACGCTAAAAGGTATAGTATGTATAATAGCCTGGCAGAGGCCCAATTTGGGATGCAAGCCCAACTTTTACCATGGATGGACTTGAAGAGGGAATTAATTCGTCCCGGACTAGGCCCAGCACACTTAGGTGACCTGGACATTGAGCCTGAGGACATAGGACTCTCACGCCCAGTTATAATAATTGACGTAAAGAGCCCACCAAAATGCAAGCCTTATTTTACGCCAAAAGGCCCAAGTCCAATTGATTTGGATGAGGAACTATCAATAGAAGAAATAACGAGATGTAGGGAGGCCATTCAGAATTCTCAGTACAAAGGGAAGCAAGCCCAAGGCTATTATCAGGGGAATGATCCGAAGGAAAATTCGCAATTAGCAATCTGGGGACCAAGAAGCCAAACAAAGGAAAGAGAAAATGCAGACTATATTGTGGAACTCCCACCTGATGAAGCAGAGCAAGTGGAAGACTATGATGGCAAGAGTTTGCAGAGCTCAGGTGAACAAGCCATTGTCAAAGCTCTCTCAGCAAACCTGTCACTTAAAAGAACTCGTGAAGGTAGTGACGAGGAGGACCCGTCCGGGAACAAGAAGACAAAGACTTCGCTCTCACAGTTAGCAGAGAGAAGGGACGAAGAAAATGAAACTCAGGAGATGGAAGTTAGTAATGAAGAGCTGAAGGCCGAGGAGGCGGGCCGCATCATGCCCCCAACGACGCCATGA 2667 0.5054 MVEKEDLGLSLSLSFPHNPPNHLHLNLMPSSTSSPSPSASNLHKPSWNDPLAFSDRDSETCRGEGRSFLRGIDVNRLPSGVDCEEEAGVSSPNSTISSVSGKRSEREAIGEEHDLDRDCSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPHLYMQMTPPTTLTMCPSCERVAVPPYAPAGNRHHPMAQAHPRPIPVGPWAHAAAPHRPFDALHPSEASFLALTMEGTSGSKGGDTLDGDTIELEEKKHVTVEVSKHALVGKVLAPKPLNRRTVRSMLIRSWGFPKGLHIVDLQMNTFLFNFSEADTPNRIMEDAPWSVLGYLVSLQRWVPEVAIHEVDYDLIPFWVQIHGAPLNGISENNARRIAERMGEVLTVENPFMENKIVRGFMRARVMVDITKTFATGFWVPRGELPKVWVTLSYEKLQGYCYNCGCLGHEQKDCKEKRAMAIWDPSKPRYGPTLGVPPVKPMHLVLSEMGMRQNREATEERSSGAWRHAQAESDKPSETVGELARGGGGNGLQKVTPAIRELQQRNWSGMAPDKKDNEGRAEGYDAGRTEKMDVERDGMGKDDVERQEHAKRYSMYNSLAEAQFGMQAQLLPWMDLKRELIRPGLGPAHLGDLDIEPEDIGLSRPVIIIDVKSPPKCKPYFTPKGPSPIDLDEELSIEEITRCREAIQNSQYKGKQAQGYYQGNDPKENSQLAIWGPRSQTKERENADYIVELPPDEAEQVEDYDGKSLQSSGEQAIVKALSANLSLKRTREGSDEEDPSGNKKTKTSLSQLAERRDEENETQEMEVSNEELKAEEAGRIMPPTTP 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3421 888 Gene3D - 137 187 - -
Sto6g3421 888 MobiDBLite consensus disorder prediction 555 581 - -
Sto6g3421 888 MobiDBLite consensus disorder prediction 796 888 - -
Sto6g3421 888 MobiDBLite consensus disorder prediction 555 595 - -
Sto6g3421 888 Pfam Homeobox associated leucine zipper 189 223 IPR003106 GO:0006355|GO:0043565
Sto6g3421 888 MobiDBLite consensus disorder prediction 104 138 - -
Sto6g3421 888 MobiDBLite consensus disorder prediction 88 102 - -
Sto6g3421 888 CDD homeodomain 133 190 IPR001356 GO:0003677
Sto6g3421 888 MobiDBLite consensus disorder prediction 831 879 - -
Sto6g3421 888 SMART HOX_1 131 193 IPR001356 GO:0003677
Sto6g3421 888 Pfam Zinc knuckle 490 517 IPR025836 -
Sto6g3421 888 SUPERFAMILY Homeodomain-like 124 190 IPR009057 -
Sto6g3421 888 PANTHER - 4 284 - -
Sto6g3421 888 MobiDBLite consensus disorder prediction 24 47 - -
Sto6g3421 888 Pfam HD-ZIP protein N terminus 1 107 IPR006712 GO:0005634
Sto6g3421 888 MobiDBLite consensus disorder prediction 24 55 - -
Sto6g3421 888 ProSiteProfiles 'Homeobox' domain profile. 129 189 IPR001356 GO:0003677
Sto6g3421 888 MobiDBLite consensus disorder prediction 83 138 - -
Sto6g3421 888 Pfam Domain of unknown function (DUF4283) 328 468 IPR025558 -
Sto6g3421 888 ProSiteProfiles Zinc finger CCHC-type profile. 503 518 IPR001878 GO:0003676|GO:0008270
Sto6g3421 888 Pfam Homeodomain 133 187 IPR001356 GO:0003677
Sto6g3421 888 SMART halz 189 232 IPR003106 GO:0006355|GO:0043565
Sto6g3421 888 ProSitePatterns 'Homeobox' domain signature. 164 187 IPR017970 GO:0000981|GO:0006355
Sto6g3421 888 MobiDBLite consensus disorder prediction 807 821 - -
Sto6g3421 888 Coils Coil 188 225 - -
Sto6g3421 888 Coils Coil 857 877 - -
Sto6g3421 888 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3421 Sto-Chr6 40039778 40044805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3421 1 290 Homeobox Transcription Factor Family AT5G47370 60.784 7.79e-102 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto6g3421 DUF4283 4.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3421 K09338 - vvi:100246436 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3421 6 40039778 40044805 Sto11g1894 11 17661736 17662948 CCT