Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3413 ATGGCTCCATCACCatcttcctcttccccttcttcttcttccacttcatcaGACACCAAATCGAAACCTCCAGAAGCTTCCAGAAACAAGAAAAGATCAGTTCTGAACAAAGCTCGCACTACTACTAGTGATCATggcgatgatgatgatgatgcctCCAGAAACTACCGTGGAGTTCGCATGCGTCAATGGGGCAAATGGGTCTCCGAAATTAGAGAGCCCAGGAAGAAATCTAGAATCTGGCTCGGCACTTTCCCCACGCCAGAGATGGCGGCTCGAGCTCATGACGTGGCGGCTCTTACCATCAAAGGCAGCTCGGCTTTCCTCAACTTCCCCGAATTAGCCGCCCAGCTTCCGCGCCCAGCCACCAACTCCCCCAAGGACATCCAAGCCGCCGCCGCCAAGGCAGCCTACCAAACAACCCACGTGGAAGAACGACGACCCTCCAATTCCCCCTTCACCGATGACGACACATTAATCTTCGACCTCCCTGATCTCTTGCTCGATTTAAATTCTCATTATCAGTTCCATCGCTCCCCGCCGTGGACGGTGGCCGGAACTGAACGCTCTGACTTCGACCCTGCCGCTTTCCGGCATTTGATAGGTATCAAGAATAGATTCTTCAAAAACGAATGGTTGGAGATGGACTGCATTCATTATACAGCTACATTCCCAGACGAATAa 684 0.4766 MAPSPSSSSPSSSSTSSDTKSKPPEASRNKKRSVLNKARTTTSDHGDDDDDASRNYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALTIKGSSAFLNFPELAAQLPRPATNSPKDIQAAAAKAAYQTTHVEERRPSNSPFTDDDTLIFDLPDLLLDLNSHYQFHRSPPWTVAGTERSDFDPAAFRHLIGIKNRFFKNEWLEMDCIHYTATFPDE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3413 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 11 175 - -
Sto6g3413 227 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
Sto6g3413 227 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Sto6g3413 227 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Sto6g3413 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 175 - -
Sto6g3413 227 MobiDBLite consensus disorder prediction 23 54 - -
Sto6g3413 227 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Sto6g3413 227 MobiDBLite consensus disorder prediction 1 22 - -
Sto6g3413 227 MobiDBLite consensus disorder prediction 1 54 - -
Sto6g3413 227 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Sto6g3413 227 CDD AP2 55 114 IPR001471 GO:0003700|GO:0006355
Sto6g3413 227 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Sto6g3413 227 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3413 Sto-Chr6 39987684 39990293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3413 55 173 AP2-EREBP Transcription Factor Family AT4G16750 69.167 1.48e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto6g3413 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3413 - - gmx:100812293 169.088
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3413 6 39987684 39990293 Sto11g1906 11 17792878 17797939 CCT