Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3411 ATGGCACCCTACAATGGTTCATCAACAAAAAGATTATTTAACAGAGGAGCATGGACCCCAGACGAAGATCGAAAACTATGTCAATGCATTGAAATTCACGGGGCCAAAAGGTGGAAGACTATTGCAGTCAAATCAGGTCTAAACAGATGCGGAAAGAGTTGCAGGCTGAGATGGTTAAACTATCTAAGACCCAACATCAAGAGGGGCAATATATCTGTTGAAGAAGAGGATTTGATTCTTAGGCTTCACAAACTGCTGGGAAACAGGTGGTCTTTGATTGCTGGGAGGATTCCTGGACGAACAGATAATGAAATTAAGAACTACTGGAATTCTCATTTGTGCAAGAAAGTAAATcacagagaagaaaaaagagtagAAACTTCAATGGCACTAGAAAAGACGTCCCAGAATGGGAGGGAGTGGGACAGTGGTGTAGAGAAAGGCGAAGGAAGTGGGAACTCAGATATTAGCTTTGACGTGAATGAGTTGTTGGACTTCTCCACTGAGGAAGCCTTTCCAAATGCGTCAGATTGGGTGAACGAGTATCTACAACTTGATCTGCTTCCTGGGATAACAGACAAGACTTCATTCTAG 594 0.4125 MAPYNGSSTKRLFNRGAWTPDEDRKLCQCIEIHGAKRWKTIAVKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLILRLHKLLGNRWSLIAGRIPGRTDNEIKNYWNSHLCKKVNHREEKRVETSMALEKTSQNGREWDSGVEKGEGSGNSDISFDVNELLDFSTEEAFPNASDWVNEYLQLDLLPGITDKTSF 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3411 197 Gene3D - 71 142 - -
Sto6g3411 197 MobiDBLite consensus disorder prediction 125 154 - -
Sto6g3411 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Sto6g3411 197 CDD SANT 72 113 IPR001005 -
Sto6g3411 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 62 IPR017930 -
Sto6g3411 197 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Sto6g3411 197 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Sto6g3411 197 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Sto6g3411 197 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 5 194 - -
Sto6g3411 197 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Sto6g3411 197 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Sto6g3411 197 SMART sant 67 115 IPR001005 -
Sto6g3411 197 SMART sant 14 64 IPR001005 -
Sto6g3411 197 Gene3D - 15 67 - -
Sto6g3411 197 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 194 - -
Sto6g3411 197 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3411 Sto-Chr6 39976523 39977285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3411 10 127 MYB Transcription Factor Family AT5G52600 62.712 1.32e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto6g3411 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3411 K09422 - pvy:116105624 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3411 6 39976523 39977285 Sto11g1907 11 17823473 17825133 CCT