Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3356 ATGTCATCATCCTCATCAACTACTGCCTTATCGCTGGAGCTGGACCACCTCCCTCCTTCCGACCAGCTTTGTTATGTCCAATGCAACCTTTGTGATACTGTCCTCGCTGTAAGCGTTCCCTGCACAAGCTTGTTCAAGACAGTGACTGTGCGATGCGGCCATTGCACCAACCTCCTGCCTGTCAACATGCGTTTGCTTCTGCCTTCCACCAACCAATTTCATTTGCCTCACTCTAATTTCTACTCTCCCTCCTCTCATAATCTTCTGGAGGAGATGCCAAATCcgtccccaaatttcttcatcaaTCAGACTAACTCATCCAATGATTTCTGTATGCCATCTAGGACTGCCTCTCATGATGACCTACCTCGCCCACCCCTCATCAATAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCCTACAACCGCTTCATTAAGGACGAGATCCAACGGATCAAGTCTGTCAATCCCGATATAACCCACAGAGAAGCCTTCAGTGCAGCTGCCAAGAACTGGGCCCACTTCCCCCACATCCACTTTGGTCTCATGCCTGATCAGTCTGTGAAAAAGACAACTGTGCGCCAGCAGGAAGGAGAGGACGTTCACATGAAAGATGGATTTTTTGCTTCGGCAAATGTTGGTGTTTCTCCTTACTAA 660 0.4773 MSSSSSTTALSLELDHLPPSDQLCYVQCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRLLLPSTNQFHLPHSNFYSPSSHNLLEEMPNPSPNFFINQTNSSNDFCMPSRTASHDDLPRPPLINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQSVKKTTVRQQEGEDVHMKDGFFASANVGVSPY 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3356 219 Pfam YABBY protein 19 183 IPR006780 GO:0007275
Sto6g3356 219 Gene3D High mobility group box domain 128 197 IPR036910 -
Sto6g3356 219 SUPERFAMILY HMG-box 127 176 IPR036910 -
Sto6g3356 219 PANTHER PROTEIN YABBY 4 1 217 - -
Sto6g3356 219 PANTHER PROTEIN YABBY 6-RELATED 1 217 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3356 Sto-Chr6 39627738 39630511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3356 30 217 C2C2-YABBY Transcription Factor Family AT4G00180 58.373 7.59e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Sto6g3356 YABBY 1e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3356 K25796 - gmx:100798441 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3356 6 39627738 39630511 Sto6g3356 6 39627738 39630511 ECH