Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3355 ATGAATGCATTTTCACACGTTCCTCCAGGCTTTCGGTTCCATCCGACAGATGAAGAACTTGTTGATTACTACCTTAGAAAAAAGATAGCCTCTAAAAGGATTGACCTAGATGTTATCAAAGATGTGGATCTCTATAAAATTGAGCCGTGGGATCTTCAAGAAATATGCAAAATAGGAGCAGAAGAACAAAACGAATGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCAACAGGAACTCGCACGAATAGAGCCACAAAAGCAGGATTCTGGAAGGCCACAGGAAGAGACAAAGCAATCTACCGTAGGAATAGCCTGATTGGTATGAGAAAGACTCTTGTTTACTACAAAGGGCGAGCCCCAAACGGACAGAAATCCGATTGGATCATGCATGAGTACCGACTTGAAACCAATGAAAACGCAACTCCTCATGAAGAAGGGTGGGTTGTGTGCAGAGTGTTCAAGAAGCGAATGACAAACACGAGGAAAATGGAGGAGTATGATCAGTCACCTTGCAGCTGGTATGATGACAATAATGTGTCCTTCATGCAAGACCCAATCTCGTCTATGTCTTATGCATCTCATTACCACCATTCCTACGCACCTTGCAAGCAATTGCAATACAACAACATACCCCATCCCCATCCTGATGCTGCTGCTTTTCTTCAGCTTCCCCAACTTGAGAGCCCCAAACTTCCTCCTCATTCACTGCTCCCTAATTACTCCTATCATGACACCAACAATAATTCAATTAGCCTCACTGCTGATCAAGAAGATCACACCATCCCACATTATTCACTTTATAGTGCAAACATCAATAATGATCAAGTCGCTACTGATTGGCGAGTTCTTGATAAGTTTGTGGCTTCTCAACTCCACCACCAAGCTGATGCTTCCAAGCAAGTTCTCCATGACGTGGATCAACAAATTAATACTTTGCTTCCAAACCAATCCAAGAGGCCACAAGTTTCTCAGCAGGAATATGCCTCCACATCCACCTCCAGTTGCCAGATTGACCTGTGGAACtga 1029 0.4354 MNAFSHVPPGFRFHPTDEELVDYYLRKKIASKRIDLDVIKDVDLYKIEPWDLQEICKIGAEEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYRRNSLIGMRKTLVYYKGRAPNGQKSDWIMHEYRLETNENATPHEEGWVVCRVFKKRMTNTRKMEEYDQSPCSWYDDNNVSFMQDPISSMSYASHYHHSYAPCKQLQYNNIPHPHPDAAAFLQLPQLESPKLPPHSLLPNYSYHDTNNNSISLTADQEDHTIPHYSLYSANINNDQVATDWRVLDKFVASQLHHQADASKQVLHDVDQQINTLLPNQSKRPQVSQQEYASTSTSSCQIDLWN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3355 342 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Sto6g3355 342 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Sto6g3355 342 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Sto6g3355 342 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Sto6g3355 342 MobiDBLite consensus disorder prediction 317 342 - -
Sto6g3355 342 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 313 - -
Sto6g3355 342 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3355 Sto-Chr6 39615701 39616944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3355 1 341 NAC Transcription Factor Family AT1G12260 56.571 1.06e-132 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto6g3355 NAM 4.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3355 - - tcc:18606319 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3355 6 39615701 39616944 Sto6g3355 6 39615701 39616944 ECH