Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3349 ATGGGGAGGCAACCTTGCTGTGACAAACTAGGCGTGAAGAAAGGACCGTGGACTGCCGAGGAAGACAAGAAACTCATCAACTTCATTCTCACCAATGGTCAGTGCTGTTGGCGAGCTGTTCCTAAGCTCGCTGGTCTCCGACGTTGTGGCAAAAGTTGTCGTCTTCGTTGGACTAATTATCTTCGTCCTGATTTGAAGAGAGGACTTCTCACTGAAGCAGAGGAACAGCTTGTCATCGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCGGCGAGATTGCCAGGAAGGACAGACAATGAGATTAAGAATCACTGGAACACACACATCAAGAAAAAGCTGCTTAAGATGGGAATTGATCCTGTCACTCATCAACCTCTTACTAAACAACCTTCCTCCTCCCAGGAAACATCTTCCATGCCACAATCTGGAAATACCCATCAGCTCAAGGAAACTGATGCTGACGGCCTTCCTAATTCTTCAGAGGAGAATTCAAGCTCATCTCCTGCTGATGCTGAGAATTCTTCTGGGGATGAATCCCTTCTGCTAGATACTATTTGCAGCGATGACTCTCTAATGAACAGCTTGTGGCTCGACCAAACACCACTTGTGGATGCATTATGGGACAGTGCACCTAAAGTAGAGAATACCAGTAATGACATGGCCATGCTGACATCTTGGGAGGATAATTGTGCTTGGTTTTTGGATTGTCAGGACTTTGGTATTCATGATTTTGGTTTCAGTTGTTTTAATGATATTGAATCAAACGCACTGCAAACTTTAGGATTGGAGGAAAAGGGGCATTAG 813 0.4563 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHQPLTKQPSSSQETSSMPQSGNTHQLKETDADGLPNSSEENSSSSPADAENSSGDESLLLDTICSDDSLMNSLWLDQTPLVDALWDSAPKVENTSNDMAMLTSWEDNCAWFLDCQDFGIHDFGFSCFNDIESNALQTLGLEEKGH 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3349 270 MobiDBLite consensus disorder prediction 127 179 - -
Sto6g3349 270 Gene3D - 12 67 - -
Sto6g3349 270 CDD SANT 16 61 IPR001005 -
Sto6g3349 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sto6g3349 270 MobiDBLite consensus disorder prediction 125 179 - -
Sto6g3349 270 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto6g3349 270 Gene3D - 71 154 - -
Sto6g3349 270 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto6g3349 270 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Sto6g3349 270 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto6g3349 270 CDD SANT 71 112 IPR001005 -
Sto6g3349 270 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 255 - -
Sto6g3349 270 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sto6g3349 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sto6g3349 270 PANTHER PROTEIN ODORANT1 2 255 - -
Sto6g3349 270 SMART sant 13 63 IPR001005 -
Sto6g3349 270 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3349 Sto-Chr6 39568851 39569744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3349 1 249 MYB Transcription Factor Family AT4G22680 61.654 8.80e-104 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto6g3349 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3349 K09422 - gmx:100786965 457.603