Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3346 ATGGCTGAAACAAGCTCTGCCACGCCCGATTCATGGAAAAGCTCGCACTGTGCAACAGAGAAGACAAGTTGCAGAGCCATCCATCACACCACCCCGATACAATTTTCTGGCCACGAAACCCATTTCCAAAATGTTGGTTCCATGGCCTCGCTTCTCAAGTCCCGCTCCGTCATACGATTCCAAGGGCCTGACACCTTAAAGTTCCTTCAGGGGCTGTTGACCAACGATGTGCGTAGGTTTGGAGAACCCATTGGTGAAAAAACCGCAAATTTGCCTACGCCCAATGTGTCAGCTGCCTCGGCTACGCCTGTGTACGCTGCGCTTTTGACCCCTCAAGGTAGATTCCTCTATGACCTCTTTCTCTATAAGCCACCAAGGTCCGAAACGAAGCTTGATAGGACCGGGACAGGACCTGGGGCTGACCCCGATGAACCCCTTAATTTGCTCGCCGATGTGGATGCTTCTGTATTGGATGAACTTTTGGAAACCCTCAAAAAATACCGGTTGAGGTCCAAGGTTGAGATTGATAATGTCAGTGAACATTTCTCATGCTGGCAGCGCTATGGTCCTGTCCTTTCTGAGAAGCCGTCACATGTGGAAGAACCAGAAGCAGCCTCTGTTGGCTGGGGTGCTGGTGTGGATCGTTCTGCAATGTCAGCTTCACGTGGGAGTAATCTTGGGTGGCAGTGGTTCAAGGACCCCCGATTGGACTGTCTTGGTTTTAGGGGGATCTTCCCATCTGAAATAACCCCTCCTCTGGTTGAGGTTGACAAAGAGACAGAAGAAGAGAACTATCTTTTTTGGAGAATAAAGAAAGGAGTAGCAGAGGGTTCAACTGAGATCCCAAAAgGTGAAGCGGTACCACTCGAGTATAATCTTGTAGGTCTTAATGCAATTAGCTTCGACAAGGGTTGCTATGTCGGCCAAGAACTCATAGCGCGGACACACCACCGAGGGGTGATTCGCAAGCGTCTGGTTCCTTTAAGGTTTCTCAACACGGATGGGGACGAAGTAGAAGACAAGGTTACTCCAGGCTCAGAGATAATTGATACAGCAAGTGGCAAGAAAGCTGGTTTAGTGAATACTGCTCTCGGATGTCGTGGGCTGGGGATCCTGAGGCTCGAGGAAGCTTTTAAAGGTTGTGGCACCTTatctattaaggatgaagataATGTGAAGGTTGAGGCTGTCCGACCAAATTGCGCTTTTAAGGTTCTCGACAAGGACTCCACTGGCTTTGTTTCCGTCTCTGAGCTTCGACACATCCTCACCAACATTGGCGAGAAACTTGAGCCTGCTGAGTTTGATGAGTGGATCAGGGAAGTGGATGTGGAAGAGAACATATGCAAGTTCGCCAAGAAGGGCTTGACGCCATCCCAGATTGGTGTCATTCTTCGGGACTCGCATGGCATTGCTCAGGTTAAAAGCGTCACTGGAAATAAAATCCTTCGCATTCTTAAAGCTCATGGACTTGCCCCTGAAATTCCCGAGGATCTTTACCATTTGATCAAGAAGGCAGTTTCAATCCGCAAGCATCTTGAGAGAAATAGAAAGGACAAGGATTCCAAGTTCAGGTTGATTCTCGTTGAGAGCAGAATCCACCGACTTGCTCGCTATTACAAGAAAACTAAGAAGCTACCACCAGTATGGAAATAG 1656 0.4813 MAETSSATPDSWKSSHCATEKTSCRAIHHTTPIQFSGHETHFQNVGSMASLLKSRSVIRFQGPDTLKFLQGLLTNDVRRFGEPIGEKTANLPTPNVSAASATPVYAALLTPQGRFLYDLFLYKPPRSETKLDRTGTGPGADPDEPLNLLADVDASVLDELLETLKKYRLRSKVEIDNVSEHFSCWQRYGPVLSEKPSHVEEPEAASVGWGAGVDRSAMSASRGSNLGWQWFKDPRLDCLGFRGIFPSEITPPLVEVDKETEEENYLFWRIKKGVAEGSTEIPKGEAVPLEYNLVGLNAISFDKGCYVGQELIARTHHRGVIRKRLVPLRFLNTDGDEVEDKVTPGSEIIDTASGKKAGLVNTALGCRGLGILRLEEAFKGCGTLSIKDEDNVKVEAVRPNCAFKVLDKDSTGFVSVSELRHILTNIGEKLEPAEFDEWIREVDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3346 551 CDD EFh 402 447 IPR002048 GO:0005509
Sto6g3346 551 SUPERFAMILY S15/NS1 RNA-binding domain 477 550 IPR009068 -
Sto6g3346 551 ProSitePatterns EF-hand calcium-binding domain. 407 419 IPR018247 -
Sto6g3346 551 Gene3D - 450 493 - -
Sto6g3346 551 CDD Ribosomal_S15p_S13e 481 551 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sto6g3346 551 Pfam Ribosomal S13/S15 N-terminal domain 438 471 IPR012606 GO:0003735|GO:0005840|GO:0006412
Sto6g3346 551 Gene3D - 494 551 - -
Sto6g3346 551 SUPERFAMILY EF-hand 400 444 IPR011992 -
Sto6g3346 551 Gene3D Probable tRNA modification gtpase trme; domain 1 14 398 IPR027266 GO:0005515
Sto6g3346 551 TIGRFAM ygfZ_signature: folate-binding protein YgfZ 264 329 IPR017703 -
Sto6g3346 551 ProSiteProfiles EF-hand calcium-binding domain profile. 402 429 IPR002048 GO:0005509
Sto6g3346 551 SMART Ribosomal_S13_N_2 429 471 IPR012606 GO:0003735|GO:0005840|GO:0006412
Sto6g3346 551 Gene3D - 400 449 - -
Sto6g3346 551 ProSitePatterns Ribosomal protein S15 signature. 509 539 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sto6g3346 551 SMART Ribosomal_S15_2 481 551 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sto6g3346 551 SUPERFAMILY Folate-binding domain 41 320 - -
Sto6g3346 551 PANTHER UNCHARACTERIZED 38 400 IPR045179 -
Sto6g3346 551 Pfam Ribosomal protein S15 485 545 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3346 Sto-Chr6 39535732 39549347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3346 438 551 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 90.517 4.63e-68 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3346 K22073 - gmx:100804156 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3346 6 39535732 39549347 Sto6g3346 6 39535732 39549347 ECH