Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3326 ATGGACAAGTCCAAGGTGCAAGCTATTTGTGATTGGGAGCCATCAAGGCGGGTGACTGAGCTACGATCCTTCCTTGGCCTCGCCAACTACTATAGAAGATTCATCAAAGGTTACTTCTCCATTGCATCCCCTTTAACAGATCTCTTGAAGAAGAACAAATCGTGGGATTGGGATGACAAGTGTCAACGGGCTTTCGAGAAGCTAAAGCAAGCCGTTACTGAGGAACCAGTGTTGGCACTACCCGACTACGCCAAGCCGTTTGAAGTGCAGACCGACGCTTATGACTTTGCCCTTGGTGGAGTCTTGATGCAGGACGGACATCCTGTCGCTTATGAGAGCCGACACCCCGGAGTAAGGCGAACGCTGGCACTGGTGGAACGCGCCTACTACTGGCCTCAGATGAGGGATGACATTGAGCTGTATCATCAATTTCACAGCCTGCAACAGCAAAACGCGGAGGAGCAAGAGCAAAGCGGGAGCAGCAGTGGGCTCAACCTGGCCCACAAGAGAGAACGCGATGAAGGCAACACCACCAACCACAAGAACAAGGATGAATTGGGGAACATGAACATGAACGAAGGGGGAGGATCGGGGGAAGGCGGAGAGATGTCTCGAAGGCCCAGAGGAAGGCCCGCGGGATCCAAGAACAAGCCCAAGCCCCCCATCATCATAACCCGAGACAGCGCCAACGCGCTTCGCACCCACGTGATGGAGGTGGGGGAAGGTTGCGACATCGTGGAAAGCGTGTCCAACTTCGCCAGGCGTCGCCAGCGTGGGGTCTGCATCATGAGCGGCACTGGCACCGTCACCAATGTCACGCTTCGCCAACCCGCTTCTTCCGGAGCCGTCGTTTCCCTCCACGGAAGGTTCGAGATCCTCTCCCTCGCTGGCTCCTTCCTCCCTCCTCCCGCTCCTCCCGCCGCCTCCGGCTTGACCATCTACCTCGCCGGTGGCCAGGGTCAGGTCGTCGGGGGGACCGTCGTCGGCACGCTGATGGCGTCGGGGCCGGTGGTGATCATGGCGGCGTCGTTTAGCAACGCGGCGTACGAGAGGCTGCCTTTGGAGGAGGAGGATCCTTCGATGCCGATGCAAGGAGGTGGAATTGGATCGCCTGGTGGTGGAGTTGGGCAGCAACAGCAGCAGATGTTGGGGGATGCAACTGCAACCGCTCCGCTGCTCCATGGATTGCCTCCTAATCTGCTGAATTCAATACAGATGCCGTCCGAGCCTTTCTGGGCTACGGCTCGGCCTCCCTTTGGATGA 1263 0.5788 MDKSKVQAICDWEPSRRVTELRSFLGLANYYRRFIKGYFSIASPLTDLLKKNKSWDWDDKCQRAFEKLKQAVTEEPVLALPDYAKPFEVQTDAYDFALGGVLMQDGHPVAYESRHPGVRRTLALVERAYYWPQMRDDIELYHQFHSLQQQNAEEQEQSGSSSGLNLAHKRERDEGNTTNHKNKDELGNMNMNEGGGSGEGGEMSRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEVGEGCDIVESVSNFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVSLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGTVVGTLMASGPVVIMAASFSNAAYERLPLEEEDPSMPMQGGGIGSPGGGVGQQQQQMLGDATATAPLLHGLPPNLLNSIQMPSEPFWATARPPFG 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3326 420 MobiDBLite consensus disorder prediction 149 222 - -
Sto6g3326 420 CDD DUF296 233 300 IPR005175 -
Sto6g3326 420 Pfam RNase H-like domain found in reverse transcriptase 57 115 IPR041577 -
Sto6g3326 420 Gene3D - 97 149 - -
Sto6g3326 420 MobiDBLite consensus disorder prediction 166 181 - -
Sto6g3326 420 Pfam Integrase zinc binding domain 113 141 IPR041588 -
Sto6g3326 420 Gene3D - 3 95 IPR043128 -
Sto6g3326 420 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 137 419 - -
Sto6g3326 420 SUPERFAMILY DNA/RNA polymerases 1 119 IPR043502 -
Sto6g3326 420 Pfam Plants and Prokaryotes Conserved (PCC) domain 233 346 IPR005175 -
Sto6g3326 420 Gene3D - 232 360 - -
Sto6g3326 420 ProSiteProfiles PPC domain profile profile. 229 365 IPR005175 -
Sto6g3326 420 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 137 419 IPR014476 GO:0003680
Sto6g3326 420 SUPERFAMILY AF0104/ALDC/Ptd012-like 229 359 - -
Sto6g3326 420 MobiDBLite consensus disorder prediction 149 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3326 Sto-Chr6 39400093 39409872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3326 202 419 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 67.660 8.24e-81 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3326 - - pvy:116125414 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3326 6 39400093 39409872 Sto6g3326 6 39400093 39409872 ECH