Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3303 ATGGTAAGGGGGAAAACTGAGATGAAACGCATAGAAAACGACACAAGCAGGCAAGTGACGTTCTCGAAGCGAAGAAACGGGCTGCTTAAGAAGGCCTTTGAACTGTCCGTACTGTGCGAGGCTGAAGTTGCACTAATAATCTTCTCTCCCACAGGGAAGCTCTCTGAGTTCTCCAGTTCTAGATGCTTCAGTATAAACAAGACGGTTGAACGCTATCAGAGGAAAGTCAAGGACTTGAGTCTCAGCATTAAAGGAATCCAACAAAATAGGCagCATCTGAAGGAAGGTTCTAGTAGCAGCATGGCAAAGAAGATCGAGCAACTCGAAGTTTCTAAAAGGAAGCTTTTGGGAGATGATTTGGATACATGTTCAATTGAGGAGTTACGTGAGCTAGAGAACCAGCTGGAACGAAGTTTAAACAAAATTAGGGCAAGAAAGTGCTGTGGTGAAGAACAAGAGTGGCGATATTTAAGCAAAGAAAAGGATGTTCCAGTCTTGAAAGAAATGAGGGATGACGTGGAGACAGAGTTAGTTATTGGACCTCCTGAGAGAGTGAGACGAATGCCTTGA 570 0.4386 MVRGKTEMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSPTGKLSEFSSSRCFSINKTVERYQRKVKDLSLSIKGIQQNRQHLKEGSSSSMAKKIEQLEVSKRKLLGDDLDTCSIEELRELENQLERSLNKIRARKCCGEEQEWRYLSKEKDVPVLKEMRDDVETELVIGPPERVRRMP 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3303 189 Coils Coil 69 89 - -
Sto6g3303 189 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Sto6g3303 189 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto6g3303 189 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Sto6g3303 189 ProSiteProfiles K-box domain profile. 91 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto6g3303 189 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto6g3303 189 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto6g3303 189 PANTHER MADS BOX PROTEIN 1 153 - -
Sto6g3303 189 Pfam K-box region 97 157 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto6g3303 189 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto6g3303 189 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto6g3303 189 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto6g3303 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto6g3303 189 PANTHER MADS-BOX PROTEIN SOC1 1 153 - -
Sto6g3303 189 Coils Coil 125 145 - -
Sto6g3303 189 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3303 Sto-Chr6 39256617 39261416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3303 1 183 MADS-box Gene Family AT4G22950 53.738 1.53e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto6g3303 K-box 6.6e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3303 6 39256617 39261416 Sto6g3303 6 39256617 39261416 ECH
Sto6g3303 6 39256617 39261416 Sto6g0940 6 9259612 9264772 ECH