Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3301 ATGCAGGAGCCCAGCTTAGGCATGATAGGCGGTGGCGGTTTAACCGGAGATTTATCCTCCGGCGAACACCACCGACAACTGAAGGCGGAAATAGCCACTCATCCACTGTACGAGCAGCTTCTCGCCGCACACGTCGGTTGCCTCCGCGTCGCCACTCCCATCGATCAACTTCCCCTCATCGACGCTCAGTTATCGCAGTCGCACCACATCCTTAGGTCTTATGCCTCCCaacaaacccattccctttcacCTCATGAGCGTCAAGACCTCGATAACTTCCTGGCACAGTATTTGATAGTGTTGTGTGCTTTCAAGGAACAGCTTCAGCAACATGTCAGAGTCCATGCCGTCGAAGCTGTCATGGCCTGCCGTGATATTGAAAATACCTTGCAAGCTCTCACtgGTGTAAGTTTGGGTGAAGGAAGTGGTGCAACAATGtcagatgatgaagatgatttgcCAATGGATTTCTCTTTAGATCAATCTGGCGCTGAAGGTCACGACATGATGGGATTTGGTCCACTACTTCCTACGGAATCTGAAAGGTCACTGATGGAAAGAGTTCGTCAGGAACTAAAGATTGAGCTGAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTTAGAGAAGAAATATTAAGGAAAAGAAGAGCTGGAAAATTACCAGGTGACACAACTTCGGTGTTGAAAAACTGGTGGCAGCAACACTCAAAGTGGCCATACCCAACTGAAGATGACAAAGCAAAACTTGTGGAGGAGACAGGGCTGCAGCTGAAGCAGATCAATAATTGGTTTATCAACCAAAGGAAACGCAATTGGCACAGCAACTCTCAATCAGTCACCTCTTTAAAGTCCAAGCGCAAGAGGTAG 867 0.4556 MQEPSLGMIGGGGLTGDLSSGEHHRQLKAEIATHPLYEQLLAAHVGCLRVATPIDQLPLIDAQLSQSHHILRSYASQQTHSLSPHERQDLDNFLAQYLIVLCAFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDDLPMDFSLDQSGAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3301 288 Pfam KNOX1 domain 27 68 IPR005540 GO:0003677|GO:0005634
Sto6g3301 288 Pfam KNOX2 domain 83 134 IPR005541 GO:0003677|GO:0005634
Sto6g3301 288 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Sto6g3301 288 ProSiteProfiles 'Homeobox' domain profile. 211 274 IPR001356 GO:0003677
Sto6g3301 288 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 288 - -
Sto6g3301 288 Pfam Homeobox KN domain 231 270 IPR008422 GO:0003677|GO:0006355
Sto6g3301 288 SUPERFAMILY Homeodomain-like 213 278 IPR009057 -
Sto6g3301 288 SMART HOX_1 213 278 IPR001356 GO:0003677
Sto6g3301 288 CDD homeodomain 214 275 IPR001356 GO:0003677
Sto6g3301 288 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 288 - -
Sto6g3301 288 ProSiteProfiles ELK domain profile. 191 211 IPR005539 GO:0003677
Sto6g3301 288 SMART KNOX2_2 80 135 IPR005541 GO:0003677|GO:0005634
Sto6g3301 288 Gene3D - 210 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3301 Sto-Chr6 39235401 39238782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3301 1 287 Homeobox Transcription Factor Family AT1G62990 80.479 1.23e-174 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sto6g3301 KNOX2 1.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3301 - - gmx:100808872 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3301 6 39235401 39238782 Sto6g3301 6 39235401 39238782 ECH