Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3291 ATGGATTCATCGTCTCAGTGGGATGAGGAAGTGATACTAGCATCGGCCACGCCCAAGAAGCGAGCGGGACGCAGAGTATTTAAGGAGACGAGGCACCCTGTGTATCGAGGCGTGAGGCGTAGGAACAATGACAAATGGGTGAGCGAAGTGCGTGTGCCTAATGATAATAAGTCCAGGATTTGGCTCGGCACCTATTCTACTCCCGAGAAGGCTGCTAGGGCCCACGACGTCGCCGCACTTGCTCTACGTGGCAGGTCCGCCTGCCTCAATTTTGCTGACTCAGCGCGGCGCTTGCCTCTCCCGGCCTCCACCGATCCCGACGAGATACGCCGCGTGGCGGCCGAGGCGGCCGAGTCGTGCCACAATGAAGAAGCGGGGAATGCTGGTATGGAAGTGGAGGTGGAGGTGGTGGAAGCAGGCGCTTCTTGGGAGTTGATGGTGGATGAGCCTTTGAGGTCTCCGTTACATCAAACTCATTATTGGGATGATGACGTGGAGCAGGTCGATGCTGAGTGTACTGAAGCTCTAGCAGCAGCTGGCTAA 543 0.5709 MDSSSQWDEEVILASATPKKRAGRRVFKETRHPVYRGVRRRNNDKWVSEVRVPNDNKSRIWLGTYSTPEKAARAHDVAALALRGRSACLNFADSARRLPLPASTDPDEIRRVAAEAAESCHNEEAGNAGMEVEVEVVEAGASWELMVDEPLRSPLHQTHYWDDDVEQVDAECTEALAAAG 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3291 180 ProSiteProfiles AP2/ERF domain profile. 34 92 IPR001471 GO:0003700|GO:0006355
Sto6g3291 180 SMART rav1_2 34 98 IPR001471 GO:0003700|GO:0006355
Sto6g3291 180 SUPERFAMILY DNA-binding domain 34 94 IPR016177 GO:0003677
Sto6g3291 180 Pfam AP2 domain 33 84 IPR001471 GO:0003700|GO:0006355
Sto6g3291 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D-LIKE 3 133 - -
Sto6g3291 180 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Sto6g3291 180 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Sto6g3291 180 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Sto6g3291 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 133 IPR045277 GO:0003700
Sto6g3291 180 CDD AP2 35 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3291 Sto-Chr6 39140757 39143869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3291 8 118 AP2-EREBP Transcription Factor Family AT1G12610 76.577 1.62e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto6g3291 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3291 - - mdm:103433061 183.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3291 6 39140757 39143869 Sto6g3291 6 39140757 39143869 ECH