Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3290 ATGGCCTCCTCCAGCAATAGCAATAGCCCCACATCGTCCAAGACAAAGAGGCACCCAGTGTATCACGGAATCCGTAACCGCGGAGGGAAATGGGTGTCGGAGATCCGGGAGCCACGTAAGAGTTCCCGCATATGGCTCGGCACTTTCTCCACCCCCGAGATGGCTGCCGCGGCCTTTGACGTGGCGGCGCTCGCTCTCAAAGGCGGCGATGCTGTCCTCAACTTCCCTCACTGGGTCGCCACTTATCCCGTGCCCGCCTCCTCCTCCGCCGCCGACATTCGCGCCGCTGCCACCGCTGCAGCCGCTCTCATGTCTCCTCCCACTGATCAGAATACTAATACTACTGAAAGTAGCAGCAGCAAtactaatactaataataataataatgatgttgTGTCGTGGTCAGAAAGAGATGAATTCGTGGACGAGGAAGCCATATTCGACATGCCAAGCTTGCTCGTGGATATGGCAGGAGGGATGCTGCTGTCCCCTCCCAGAATCTCACCACCACCCTCTGATCATCACTCTCCTCAAGATGGCGGAGATATGCAGGAGGGTTTACCGACTCCATCTAGTAATGGATGTGTGGAAAGGTga 597 0.5394 MASSSNSNSPTSSKTKRHPVYHGIRNRGGKWVSEIREPRKSSRIWLGTFSTPEMAAAAFDVAALALKGGDAVLNFPHWVATYPVPASSSAADIRAAATAAAALMSPPTDQNTNTTESSSSNTNTNNNNNDVVSWSERDEFVDEEAIFDMPSLLVDMAGGMLLSPPRISPPPSDHHSPQDGGDMQEGLPTPSSNGCVER 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3290 198 MobiDBLite consensus disorder prediction 104 131 - -
Sto6g3290 198 MobiDBLite consensus disorder prediction 1 24 - -
Sto6g3290 198 ProSiteProfiles AP2/ERF domain profile. 20 76 IPR001471 GO:0003700|GO:0006355
Sto6g3290 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 179 - -
Sto6g3290 198 PANTHER ETHYLENE RESPONSE FACTOR 11 179 - -
Sto6g3290 198 SMART rav1_2 20 82 IPR001471 GO:0003700|GO:0006355
Sto6g3290 198 CDD AP2 21 77 IPR001471 GO:0003700|GO:0006355
Sto6g3290 198 MobiDBLite consensus disorder prediction 159 198 - -
Sto6g3290 198 MobiDBLite consensus disorder prediction 1 16 - -
Sto6g3290 198 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Sto6g3290 198 SUPERFAMILY DNA-binding domain 20 77 IPR016177 GO:0003677
Sto6g3290 198 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3290 Sto-Chr6 39133814 39134778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3290 17 179 AP2-EREBP Transcription Factor Family AT5G52020 53.659 3.70e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto6g3290 AP2 2.7e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3290 - - gmx:100778793 171.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3290 6 39133814 39134778 Sto6g3290 6 39133814 39134778 ECH