Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3277 ATGGCGACGACTAGGTCACCCAATCGTTCCTCCGAGGACATAGTCGATACGACGCCTTTGATATCCAATTCCGCTGGGTCTTCCGATGAATTCCATTCTGGCCGTCGATTTATTCGTAGGCAGAGCCTACGCCAAGCGGCTCGGTTCTTGAGGCAGGCCAGTGGCCATAGGATGATGCGCGAGCCATCGATGCTGGTCAGGGAGACGGCAGCCGAGCAATTGGAAGAGAGACAGGGCGATTGGGCTTATTCCAGACCCATTGTGATTCTTGATATTTTGTGGAACTTTATCTTCGTGGTTGTGGCCGCTGCAGTTTTGATTATGAGTCCAAATGAATCGCCGAGCACGCCTTTGAGGTTGTGGATCGTCGGCTATGCTCTGCAATGCATCCTTCATGTCACTTGTGTTTGTGTTGAATATCGGAAACGGAGACGGTACCGGCGCCGCCAGTTTTCGCAGTCATTGAATTCAGAGCAAGGAAGGATTGACAGCAGTGGGAATTTGAGTTCGGGTTCAAGGGAGGGTTCTGCGCAGTACGTTTCATTGTCGCAATTCGAGGAAGATCGTACAAGCGTCGCAAAGCATTTGGAATCAGCAAACACTATGTTTTCATTTATCTGGTGGATCATAGGGTTTTACTGGGTATCTGCTAACAGTCAAAATTTAGCCCAGGATTCTCCTCAGCTTTACTGGCTGTGTATAGTTTTCCTGGGATTTGATGTTTTCTTTGTCGTATTCTGTGTTGCACTGGCATGCATAATTGGTATTGCTGTTTGCTGTTGTCTTCCATGTATCATTGCGCTTCTGTATGCAGTTACAGACCAGGAAGGAGCAACAAAAGAAGACATTGACCAGTTGTCCAAGTTCAAATTCCAAAGAATTGATAGTAATGAGAAACTTGCTGGTGAGGCACAGGGACCTGTTGGTGGGATAATGACTGAATGTGGCACTGATTCACCAATTGAACGCAATCTTTCTGAAGAGGATGCGGAATGTTGCATTTGCCTTTCTGCTTATGATGACGGTGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGACAAGTGGCTTTATATTAATGCCACTTGTCCCCTCTGCAAGTATAACATCCTGAAGAGTATCAACCAGAGTCAAGACGAAGTGTAG 1164 0.4674 MATTRSPNRSSEDIVDTTPLISNSAGSSDEFHSGRRFIRRQSLRQAARFLRQASGHRMMREPSMLVRETAAEQLEERQGDWAYSRPIVILDILWNFIFVVVAAAVLIMSPNESPSTPLRLWIVGYALQCILHVTCVCVEYRKRRRYRRRQFSQSLNSEQGRIDSSGNLSSGSREGSAQYVSLSQFEEDRTSVAKHLESANTMFSFIWWIIGFYWVSANSQNLAQDSPQLYWLCIVFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVTDQEGATKEDIDQLSKFKFQRIDSNEKLAGEAQGPVGGIMTECGTDSPIERNLSEEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSINQSQDEV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3277 387 SMART ring_2 332 372 IPR001841 -
Sto6g3277 387 CDD RING-H2_RNF111_like 331 375 - -
Sto6g3277 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 382 IPR013083 -
Sto6g3277 387 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 387 - -
Sto6g3277 387 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Sto6g3277 387 Pfam Ring finger domain 331 373 IPR001841 -
Sto6g3277 387 PANTHER TARGET OF ERK KINASE MPK-1 5 387 - -
Sto6g3277 387 SUPERFAMILY RING/U-box 324 380 - -
Sto6g3277 387 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3277 Sto-Chr6 39052954 39055869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3277 1 382 C3H Transcription Factor Family AT1G68070 45.312 2.95e-112 330