Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3275 ATGGCGCCATTGCCGGTGGAGCAGACTGGTGAATCAGCACCAACTGACTCGCAGAGATCTATTCCGACGCCGTTTCTAACGAAAACTTTCCAGCTTGTGGATGATCCCTCTGTGGACGACCTCATTTCGTGGAACGAAGATGGAACGAGTTTCATAGTTTGGCGACCCGCTGAGTTCGCTCGAGATTTGCTTCCCAAGTATTTCAAACACAACAACTTCTCCAGTTTCGTCCGTCAACTCAACACCTATGGATTTCGGAAGGTTGTCCCGGATCGTTGGGAATTCGCTAATGACTGTTTCCGGCGAGGCGAGAGAAGCCTACTTCGAGACATACAACGGCGGAAGATATCGCCGTCTCCAGCTGCGGCGGCCGTAGGTGCAGCGAATACGGTGACGGTGGCTGCCGTGGCGATAGCGGTGTCTCCGACGAACTCTGGTGAGGAACAGGTAATCTCTTCAAACTCATCTCCAATTGCTGCACATAACAGTAACACAGTACTGCAGCGCACCACAAGTTGCACTACTGCGCCCGAGCTCTtcgaagaaaatgaaaagcttAGGAAAGAGAACATGCAATTGAGTAACGAATTGAGCCAATTAAAGGGGCTATGTAATAACATACTGACTTTGATGACTAATTATGCTTCAAGCCAATTAGAGTCCACCACTAGTGTTCCTGAAGGGAAACCATTGGAGCTTTTACCTGCCGCGCAGCAACAACTTCAGGCGGAGGAGACAGCCGTGGGAGGTGAGACGGAAGCGGAGGTGCCCAAGTTGTTTGGTGTTTCTATTGGAACTAAACGACGTAGGTTGATTTCAGAGGGAGAGgaagcagagaaagagaaattagaGGAACAAAATCAAGCACAGTCCTCTCAGGATCCCGACGGTGGCTCCGATATGAAAACAGAGCCGTTGGATTGCAGCAACTCCGTGGACGATCAGGAGACGCCGTGGTTGGAGCTTGGAGGAAAATAA 978 0.4867 MAPLPVEQTGESAPTDSQRSIPTPFLTKTFQLVDDPSVDDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERSLLRDIQRRKISPSPAAAAVGAANTVTVAAVAIAVSPTNSGEEQVISSNSSPIAAHNSNTVLQRTTSCTTAPELFEENEKLRKENMQLSNELSQLKGLCNNILTLMTNYASSQLESTTSVPEGKPLELLPAAQQQLQAEETAVGGETEAEVPKLFGVSIGTKRRRLISEGEEAEKEKLEEQNQAQSSQDPDGGSDMKTEPLDCSNSVDDQETPWLELGGK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3275 325 Gene3D - 17 115 IPR036388 -
Sto6g3275 325 MobiDBLite consensus disorder prediction 271 325 - -
Sto6g3275 325 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Sto6g3275 325 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto6g3275 325 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto6g3275 325 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto6g3275 325 MobiDBLite consensus disorder prediction 271 287 - -
Sto6g3275 325 Coils Coil 268 293 - -
Sto6g3275 325 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 11 308 - -
Sto6g3275 325 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto6g3275 325 MobiDBLite consensus disorder prediction 1 21 - -
Sto6g3275 325 Coils Coil 176 203 - -
Sto6g3275 325 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto6g3275 325 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 308 IPR027725 -
Sto6g3275 325 MobiDBLite consensus disorder prediction 288 316 - -
Sto6g3275 325 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3275 Sto-Chr6 39043934 39045005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3275 16 323 HSF AT4G11660 56.535 3.10e-109 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto6g3275 HSF_DNA-bind 2.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3275 K09419 - gmx:100791020 420.239