Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3266 ATGTACTCGTCAGTCGTTTCAGAACGCCCTAAGGCGTTATTGAAGCTTTTCTGCAACTTCATCTTCACACGAAGCATGGGCGGGGGTCCTCGCACCTTCCCCGGCGGAGTCAACAAGTGGAAATGGAAGCGCATGCATGAGAAGCGAGccagagataaagagaaaaggCTTCTCGAACAAGAAAAGCAGCTCTACCAGGCTCGCATTCGTTCCCACATCCGAGCCAAACTTGCGGGAAAACCTGACGTTTCAAACGCCACTCATGGCCCCATGGGCCCTCACGACCACATTAAGGCCTTAGCCAATCGATTTATGAAGGAAGGGGCTGAAGATCTCTGGAACAGAAATGACGGTCCCTTGAAGTCTCCGCCTCCGCATTCCAAAGAATTTTCAGGATCGAACAGACGGCCAGGATCACTTGAATCGCCCGTGGATCTGAGGAAACTGATACCGGGAGGCCGTCAAATGTTTTCTAATCGTCAACACGACAATTTGACGAATTTGAGAAATAATTATACTCAGACTACTAGGGATTACTCAACGCAAAGCGATAGTGAATCCGACTTGGATTCAGAGTATTTCAGAGCTGGCAGGGACGTAAATAAGATAGGTAGTAGTGCTTCTTTGGGGAAGTATGACGTAAAGACGAAGAGGAGGGTGCCGCCAAAGCCATATGACGAGGAGAGTGATCTCTCGGAGCAAGTTGAATTGATCAGGTATGAACTAAATAAGAGGAAGATGACTGAGAATGAGCCGCAGAAAGGTGAGGAAGAAACGCTACTTAGTCAGAGCAGATTTGATGAGTGTGGTATATCACCATTGACAATCAAGGCACTTTCTTCAGCCGGTTATATTCGCATGACTCGAGTTCAAGAGGCTAGCCTTTCTGTTTGCCTCGAGGGCAAGGATGCTTTGGTCAAAGCTAAAACTGGCACTGGGAAGAGTGCAGCATTTTTGCTTCCTGCTATTGAAACAGTTCTTAAAGCAATGAATACAAATTCCCGTCAACGCGTGCCTCCAATACTTGTTCTGATTCTATGCCCTACCAGAGAACTTGCTAGTCAAATCGCTGCTGAATTAAAAGTTCTACTGAAGTACCATGATGGAATTGGGGTGCAGACTCTAGTAGGAGGTATTCGATTTAAAGACGACCTAAAACGTCTTGAATCAGATCCATCCCAGATAATTGTTGCTACTCCAGGTCGGTTGCTGGATCATATTGAGTATAAGTCTGGAATATCTCTTCGGTTGATGGCCTTGCAGATGCTTGTACTTGATGAAGCTGATCTTTTGTTGGACCTGGGATTtcgaaagaatatagaaaatcttGTTGATTGTTTGCCCCGTGAAAGGCAATCGCTGCTATTTTCTGCAACCATTCCAAAGGAGGTTCGTCGTATATCTCAACTTGTTTTGAAAAGGGAACACACATACATTGATACAGTGGGGATAAGTTGTGTGGAAACTCCTGTTAAGGTAAAGCAATCTTATCTTGTTGCTCCTCATGAATTGCATTTTCAAATATTGCACCATATCTTGAAGGAGCATATTTTGCAAGCACCTGATTACAAGGTTATTGTTTTTTGTATTACGGGGATGGTGACTTCACTCTTGTATCAACTCCTCCGAGAGATGAAAATGAATGTTAGGGAGATACATTCCAGAAAACCTCAACTTTATCGGACTCGCATATCAGATGAATTCAGGGAATCCAAACAATTGATTCTTGTCTCATCTGATGTTTCATCTCGTGGAATGAATTATCCTGATGTTAGTTTAGTCATTCAgGTGGGTATTCCTTTTGATCGAGAACAATATATACACCGTGTTGGAAGAACCGGACGAGAAGGCAAAGAAGGGGAAGGCATACTGTTGATTGCTCCATGGGAAGAGTACTTTTTAGATGAAATCAAGGATCTCCCTCTCAAGAGATTCCCTTTACCAGATATAGATCCGCAGACGAAGCTTAAGATTGAAAATTCAATGGCTAAGATTGATAACGACGTGAAAGACTCAGCTTATCATGCTTGGCTTGGTTATTATAATTCGATCAGGGAAATTGGGAGAGATAAGACCACTCTATCTGAGCTAGCGAGCCAATTTTCTGAATCAATTGGCTTGCCGAGGCCTCCGGCTCTCTTTAGAAAGACTGCACTAAAAATGGGACTGAAAGATATTCCTGGCATCAGAATACGTAGATAG 2202 0.4305 MYSSVVSERPKALLKLFCNFIFTRSMGGGPRTFPGGVNKWKWKRMHEKRARDKEKRLLEQEKQLYQARIRSHIRAKLAGKPDVSNATHGPMGPHDHIKALANRFMKEGAEDLWNRNDGPLKSPPPHSKEFSGSNRRPGSLESPVDLRKLIPGGRQMFSNRQHDNLTNLRNNYTQTTRDYSTQSDSESDLDSEYFRAGRDVNKIGSSASLGKYDVKTKRRVPPKPYDEESDLSEQVELIRYELNKRKMTENEPQKGEEETLLSQSRFDECGISPLTIKALSSAGYIRMTRVQEASLSVCLEGKDALVKAKTGTGKSAAFLLPAIETVLKAMNTNSRQRVPPILVLILCPTRELASQIAAELKVLLKYHDGIGVQTLVGGIRFKDDLKRLESDPSQIIVATPGRLLDHIEYKSGISLRLMALQMLVLDEADLLLDLGFRKNIENLVDCLPRERQSLLFSATIPKEVRRISQLVLKREHTYIDTVGISCVETPVKVKQSYLVAPHELHFQILHHILKEHILQAPDYKVIVFCITGMVTSLLYQLLREMKMNVREIHSRKPQLYRTRISDEFRESKQLILVSSDVSSRGMNYPDVSLVIQVGIPFDREQYIHRVGRTGREGKEGEGILLIAPWEEYFLDEIKDLPLKRFPLPDIDPQTKLKIENSMAKIDNDVKDSAYHAWLGYYNSIREIGRDKTTLSELASQFSESIGLPRPPALFRKTALKMGLKDIPGIRIRR 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3266 733 MobiDBLite consensus disorder prediction 112 145 - -
Sto6g3266 733 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 236 732 - -
Sto6g3266 733 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 29 119 - -
Sto6g3266 733 CDD SF2_C_DEAD 493 626 - -
Sto6g3266 733 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 264 292 IPR014014 GO:0003724
Sto6g3266 733 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 634 IPR027417 -
Sto6g3266 733 Gene3D - 488 709 IPR027417 -
Sto6g3266 733 Coils Coil 43 63 - -
Sto6g3266 733 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 295 478 IPR014001 -
Sto6g3266 733 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 512 662 IPR001650 -
Sto6g3266 733 Gene3D - 241 480 IPR027417 -
Sto6g3266 733 SMART helicmild6 536 617 IPR001650 -
Sto6g3266 733 PANTHER RNA HELICASE 29 119 - -
Sto6g3266 733 PANTHER RNA HELICASE 236 732 - -
Sto6g3266 733 Pfam Helicase conserved C-terminal domain 511 616 IPR001650 -
Sto6g3266 733 SMART ultradead3 283 494 IPR014001 -
Sto6g3266 733 Pfam DEAD/DEAH box helicase 288 466 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3266 Sto-Chr6 39005293 39009476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3266 264 642 Eukaryotic Initiation Factors Gene Family AT3G19760 29.219 9.01e-48 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3266 - - lang:109349967 1063.91