Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3265 ATGGCGTTCAGTGGGACCCTTCAGAAATGCAAAGCTTGCGATAAAACGGTCCATTTCATCGATACCTTGTCCGCCGACGGTGTCGTTTATCACAAGACCTGCTTCAAATGTTCTCACTGCCATGGCCTTCTCGTGATAAGCAATTACTCCTCCATGGATGGAGTCTTGTACTGCAAGCCTCACTTTGAGCAGCTTTTCAAGGAGACTGGCACCTTCACTAAGAAATTGCAGACATCTGGAAAGCCTCAGAATGAGCAGAACAAGGCACCAAGCAAAGTGTCAGCCATGTTTTGTGGGACTCAAGACAAATGTTCATCCTGCAAGAAAACAGTATACCCACTAGAAAAGTTGAGTGTGGAAGGTGAGTTTTACCACAAGACATGCTTCAGGTGTTGCCACGGAGGATGTTTTCTGACAATGTCGACCTATGCTGCACTGGATGGACAATTTTATTGCAAGCACCATTTTGCTCAGCTCTTCAAGGAGAAAGAGAAATTAAAGGATAGTGAAATTTGGATGTACAATTACTTGGATCTGTGGGATGCATGCCAATACATCATTATGTCCACTTATTTCATATGTACTTCATTCTTTTTCCAATGA 603 0.4328 MAFSGTLQKCKACDKTVHFIDTLSADGVVYHKTCFKCSHCHGLLVISNYSSMDGVLYCKPHFEQLFKETGTFTKKLQTSGKPQNEQNKAPSKVSAMFCGTQDKCSSCKKTVYPLEKLSVEGEFYHKTCFRCCHGGCFLTMSTYAALDGQFYCKHHFAQLFKEKEKLKDSEIWMYNYLDLWDACQYIIMSTYFICTSFFFQ 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3265 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 166 - -
Sto6g3265 200 SMART lim_4 103 155 IPR001781 -
Sto6g3265 200 SMART lim_4 9 61 IPR001781 -
Sto6g3265 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 75 - -
Sto6g3265 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Sto6g3265 200 Gene3D Cysteine Rich Protein 5 72 - -
Sto6g3265 200 Gene3D Cysteine Rich Protein 98 168 - -
Sto6g3265 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Sto6g3265 200 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Sto6g3265 200 Pfam LIM domain 104 159 IPR001781 -
Sto6g3265 200 Pfam LIM domain 10 65 IPR001781 -
Sto6g3265 200 CDD LIM1_SF3 6 68 - -
Sto6g3265 200 PANTHER LIM DOMAIN-CONTAINING PROTEIN PLIM2B 1 164 - -
Sto6g3265 200 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Sto6g3265 200 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Sto6g3265 200 PANTHER OS06G0237300 PROTEIN 1 164 IPR045268 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3265 Sto-Chr6 39001740 39003313 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Sto6g3265 LIM 3.8e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3265 - K24413 mnt:21407059 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3265 6 39001740 39003313 Sto6g3265 6 39001740 39003313 ECH