Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3263 ATGAGAATAGCAGGGGCATATTCGGGATTGTTGTGTGGAAAATCAGGGGCTCACACCTCTCTGCCATTGGCAAGAATCAAGAAGATAATGAAGAAATCAGGGGATGACGTCAAAATGATATCAGGAGACGCTCCCATTGTTTTCTCTAAAGCTTGTGAGCTCTTTATTCAGGAACTTACTAGAAGCTCCTGGACTCTTGCCATCCAAGCCAAAAGGACAACTCTCCACAAACACGACGTCGCTTCCGCCGTTTTGGCCACTGATCTTTTCGACTTCTTGATCGATTTGGTTTCCCCCGTTAACCTTAACCTTAACATGTGGGATGATGTGAATGTGATTGTTGATGAGATACGATGTTGTCGGAGCTTCTTGCAGATGCCAAGGCAGCAGCTGCTTTTTTCTCCAGCCTTCGCCTGA 417 0.4604 MRIAGAYSGLLCGKSGAHTSLPLARIKKIMKKSGDDVKMISGDAPIVFSKACELFIQELTRSSWTLAIQAKRTTLHKHDVASAVLATDLFDFLIDLVSPVNLNLNMWDDVNVIVDEIRCCRSFLQMPRQQLLFSPAFA 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3263 138 Gene3D Histone, subunit A 13 98 IPR009072 GO:0046982
Sto6g3263 138 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 102 - -
Sto6g3263 138 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 102 - -
Sto6g3263 138 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 19 84 IPR003958 -
Sto6g3263 138 SUPERFAMILY Histone-fold 18 93 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3263 Sto-Chr6 38991676 38992989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3263 20 97 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.538 3.63e-28 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Sto6g3263 CBFD_NFYB_HMF 7.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3263 - - ccaj:109817175 150.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3263 6 38991676 38992989 Sto6g3263 6 38991676 38992989 ECH