Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3221 ATGACTTCGTTTGCTGCATTTTCTCTCCAGTACCCAAGAGCATCAGAGGAGCATGTTCCACTATCATCTCATCAGGGTTCTGCTTCTGCTTTTCCTGGAGGGCTCCTAGTTGATACTAATCTTGACACTTCGAGCCCTGATACTTATAGACCTCCTCCTGCTCCTATCCCTTACAGTGTTACTTTAGTTGTCACTCCACCCAGCGCTCATGAAATTAGTGATGATAAGGCCAATGCATCCTTGCATTCTTCAAATCCTAATTCAGTTCAAGAAACTGTTACTAGTGACAATCGTGGAACCTCGGCTAAATTGGAACAGCTGAAGGAATCAGAGTGCAAAGATCAGGGTGATTTAGAACTGGACTCAGCAAAGGATTCGGAAATTGAACTTAAAAAGCTGGCAGAACCTATCGGGTTAGCTGAAGAGGAGGATGTGTGTCCAATTTGTTTAGAAGGTGATGTTGTCACAAGGTTACTGATGGACCTCCTTCTCTTTATCCTCACAGAATACGATGCCGAGAATCCTAAACTAAGCACAAAATGTGACCATCATTTTCACCTTGCATGCATTTTGGAATGGATGGAAAGAAGTGAAAGCTGTCCTGTATGTGATCAGGATGTGATTTTCAACCCTCCACTTGATTAA 645 0.4295 MTSFAAFSLQYPRASEEHVPLSSHQGSASAFPGGLLVDTNLDTSSPDTYRPPPAPIPYSVTLVVTPPSAHEISDDKANASLHSSNPNSVQETVTSDNRGTSAKLEQLKESECKDQGDLELDSAKDSEIELKKLAEPIGLAEEEDVCPICLEGDVVTRLLMDLLLFILTEYDAENPKLSTKCDHHFHLACILEWMERSESCPVCDQDVIFNPPLD 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3221 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 210 IPR013083 -
Sto6g3221 214 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 5 213 - -
Sto6g3221 214 MobiDBLite consensus disorder prediction 69 114 - -
Sto6g3221 214 SUPERFAMILY RING/U-box 140 210 - -
Sto6g3221 214 SMART ring_2 146 203 IPR001841 -
Sto6g3221 214 ProSiteProfiles Zinc finger RING-type profile. 146 204 IPR001841 -
Sto6g3221 214 MobiDBLite consensus disorder prediction 78 101 - -
Sto6g3221 214 Pfam RING-H2 zinc finger domain 173 203 IPR024766 GO:0008270
Sto6g3221 214 MobiDBLite consensus disorder prediction 18 54 - -
Sto6g3221 214 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 5 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3221 Sto-Chr6 38730750 38731580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3221 11 214 C3H Transcription Factor Family AT5G41350 47.847 4.57e-50 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3221 - - gmx:100816369 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3221 6 38730750 38731580 Sto6g3221 6 38730750 38731580 ECH