Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3216 TTGCAATGGAAATGCAGCTTTCTCAACTTTCTGAATTATGATGATCATCGTCCAATGGGAACCTGTCATGCCGAGTTAGATGTCGTACACGAGGAAAGGAAGGTTAGTTCCCAGTTCCCAGCTCCCAGGTCTCTTATAATTTATCTATCTAGGTCTCCTTCACCCCGTGACACCAAATCTCCTGTGAGAGGCCATCGATCAAGGTCAAGATCATTATCCAGGTCTAGGAGGAGTCGCTCCAGGAGTCGGGATTCAATAGATGTTTCGAATCCTGGAAATAATTTGTATGTAACAGGTTTGTCCACCAGGATCACTAACAGTGATCTTGAGAATTATTTCGGCAAAGAAGGAAAGGTTGTTGATTGCCACCTGGTTACAGATCCTCGCTCCAAAGAGTCTCGTGGATTTGGTTTTGTCACTATGGAAACTAATGAAGATGCTGAACGCTGTATCAAGTACCTGAATCGCTCTGTTTTTGAAGGTCGATTAATAACTGTTGAAAAGGCAAAGAGAAAACGTGGCAGGACACCTACTCCAGGCAAATACCATGGTTTGAGAGATAAGCGAGGACGTGATTGGAGAAGGTCCCGTAGTCAGTCACCTAGGCATTGGCCGGAGAGAGATAATTATTCGAAGGACCGACGAGGAAGATCTCGTTCTCCTTACAGTAGGAGGACAGATGATTACTCTACCTCATATAGGAGGCGAAGGGAACGCTCATTGTCAGCTGGTGATAGTCGCTATCCAAGATGA 753 0.4515 LQWKCSFLNFLNYDDHRPMGTCHAELDVVHEERKVSSQFPAPRSLIIYLSRSPSPRDTKSPVRGHRSRSRSLSRSRRSRSRSRDSIDVSNPGNNLYVTGLSTRITNSDLENYFGKEGKVVDCHLVTDPRSKESRGFGFVTMETNEDAERCIKYLNRSVFEGRLITVEKAKRKRGRTPTPGKYHGLRDKRGRDWRRSRSQSPRHWPERDNYSKDRRGRSRSPYSRRTDDYSTSYRRRRERSLSAGDSRYPR 250
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3216 250 Gene3D - 50 177 IPR012677 -
Sto6g3216 250 MobiDBLite consensus disorder prediction 50 92 - -
Sto6g3216 250 MobiDBLite consensus disorder prediction 170 250 - -
Sto6g3216 250 SUPERFAMILY RNA-binding domain, RBD 90 198 IPR035979 GO:0003676
Sto6g3216 250 SMART rrm2_1 94 167 IPR003954 GO:0003676
Sto6g3216 250 PANTHER OS08G0385900 PROTEIN 50 238 - -
Sto6g3216 250 MobiDBLite consensus disorder prediction 180 244 - -
Sto6g3216 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 164 IPR000504 GO:0003723
Sto6g3216 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 171 IPR000504 GO:0003723
Sto6g3216 250 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 50 238 - -
Sto6g3216 250 CDD RRM_RBMX_like 92 171 - -
Sto6g3216 250 SMART rrm1_1 94 167 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sto6g3216 Sto-Chr6 38719093 38722559 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3216 94 181 Eukaryotic Initiation Factors Gene Family AT4G34110 28.409 4.36e-06 45.4
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3216 6 38719093 38722559 Sto6g3216 6 38719093 38722559 ECH