Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3215 TTGCATCGTGTGGACTGCTTGATCGCGTATTTGTATAGCACCTGCTCATCCCAACAGTTCCGATCATGGGACATGGACACGGACGATCCCCGAAAAGGATTCGTCGATGATGATGATGCGTTCACGGGCAACGATGGATACGACGATGATGGTGAGAACGAGAACAAACTCAAAGATTTTAGCAAGCTGGAGCTGAAACAGGATCACACGAATCGGCCACTATGGGCTTGTGGCAATGGTCGGATATTCCTCGAGACCTTCTCTCCTTTGTACAAACAAGCTTACGATTTCCTTATTGCCATAGCAGAACCCGTTTGCAGGCCGGAGTCAATGCACGAATACAACCTCACTCCACATTCGCTGTATGCTGCGGTTTCAGTTGGTCTCGAGACGGAAACTATCATATCAGTTTTGAACAAGTTATCCAAGATTATGCTTCCTAAAGAGATGATTAAATTTATAAAGGATTCTACTGCAAATTATGGCAAAGTGAAGCTTGTACTTAAGAAAAACCGATACTTCATTGAATCTCCATTTCCAGAGGTATTGAAGACATTGCTCAGGGATGAAGTTATATCTCGAGCAAGGATCACATCTGAGGGTGCAAATGGAGATGGGTTTACAATCAGCAAAGCAGCAGGTGATAATATAAGCACACATGATGAGTTGCTGAATGAAGCAGAAGTGGCTGCAGCTGcagaagaaaaagaaactcATGCATTTGAAATTGATTCTTCTCAGGTTGAAAATGTAAAGCAACGCTGCTTGccaaatcaattaaattatcCCATGTTGGAGGAGTATGACTTTAGAAATGATACAATCAACCCTGATCTTGATatggaattaaaacctcaagcACAGCCACGACCATATCAAGAGAAGAGCCTGAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGTATTATAGTTCTACCCTGCGGTGCTGGAAAGTCGCTAGTAGGTGTTTCTGCAGCCTGCCGTATAAAAAAGAGCTGCCTTTGTTTGGCAACAAATGCTGTGTCTGTAGACCAGTGGGCTTTTCAGTTTAAGCTATGGTCAACCATTCGAGATGAAAATATTTGTCGATTCACATCTGATAGCAAAGAGAGATTCCGTGGTAATGCAGGTGTGGTTGTGACAACATTTAATATGGTTGCTTTTGGTGGTAAACGGTCTGAAGAATCTGAAAAGATCATTGAAGAAATAAGAAACAGAGAATGGGGATTGCTCCTCATGGATGAGGTGCATGTGGTTCCTGCACATATGTTTCGGAAGGTCATTAGCCTCACTAAATCTCACTGCAAACTTGGGCTAACAGCCACACTTGTGAGAGAGGACGAAAGGATTACAGATTTGAATTTCCTCATTGGTCCCAAGTTGTATGAAGCAAATTGGTTAGATCTTGTGAAAGGTGGATTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACAAAAGAGTTTTTTGCGGAGTATCTGAAGAAAGAGAACTCCAAGAAGAGGCAGACTGTATTTTGTTTTGAGGATGTTTTGAATTTGAGTTTATCTGTGGATCAAGCACTTTATGTGATGAATCCAACTAAGTTCAGAGCATGCGAGTTTCTCATAAGATACCATGAAACACAGCGTGGTGATAAAATTATAGTCTTTGCTGATAATCTTTTTGCTCTCACTGAGTATGCCATGAAACTCCGAAAACCAATGATATATGGTGCTACAAGCCATATTGAGAGGACAAAAATTCTACAAGCATTCAAAACTAGCAAAGATGTCAACACTATATTTCTTTCCAAGGTCGGTGATAACTCAATTGATATTCCAGAGGCAAATGTGATAATTCAGATCTCTTCACATGCTGGTTCAAGGCGTCAAGAAGCACAACGTCTGGGTCGTATTCTTAGGGCAAAGGGTAAGCTTCAGGATAGGATGGCAGGGGGTAAGGAGGAGTACAATGCTTTCTTTTATTCTCTAGTATCTACAGATACCCAGGAGATGTACTATTCAACCAAGAGGCAGCAATTTTTAATTGATCAGGGTTATAGCTTTAAGGTTGATTGCTTATTTAAATTTAGTACTATTGTAACCATGGTTTCTATTGCATTTTGCATGAATATGTTAAAGCTCAATAGTGTAATTACAAGCTTGCCTCCAGAGGACGAAGGAGCTTCGTTGAGTTACTATTATCTTGAGGATCAATTGGCGCTTCTTGGAAAGGTGTTGAGTGCTGGAGATGATGCTGTTGGTCTAGAGCAATTAGAAGAAGATGCAGATGACATAGCTCTTCACAATGCCCGTCGTTCTGCAGGATCAATGAGTGCAATGTCAGGTGCAAAGGGGATGCTTTACATGGAATACAGCTTGCTTGATCAGTTAACCAGATACAAGTTATTGATCTGTATAATTGATGGTTGCCCTTTTTATCCACACAGTACTGGGCGTAACAAGGGTCAAGGACAGATGAAGACATCGGCGACGCCGAAGAAGCGAGCTGGACGCAGAGTGTTCAAGGAGACGAGGCATCCTGTGTACCGAGGCGTGAGGAGTAGGAACAACGACAAGTGGGTGAGCGAAGTGCGTGTGCCTAATGATACTAAGTCCAGGATTTGGCTAGGAACCTATTCCACTCCCGAGAAGGCCGCTAGGGCCCACGATGTTGCTTCACTCGCCCTTCGTGGCAACTCCGCTTGCCTCAATTTTGCTGACTCCGCAAGGCGCTTCCGTCTCCCGGCGTCCAATGACGCGGAGGAGATACGGCGAGCGGCGGCGGAGGCGGCGGAGTCACACGAGCATCAAGTTAGTATGGGAGAAGGTgcagggaagaagaagaaggatatGGAActggaaatagaagtggaagttGCGGAGAGTGTTGTGTTGGGGATGGTGGATGAGCCTTTGAGGTCCCCGCCACCTCGTCTTCCACGTGATGATGAGTGGGATGATCACGTGGAGGATGATGCTGAGGTCTCACTTTGGAgctttcccttttga 3003 0.4239 LHRVDCLIAYLYSTCSSQQFRSWDMDTDDPRKGFVDDDDAFTGNDGYDDDGENENKLKDFSKLELKQDHTNRPLWACGNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIISVLNKLSKIMLPKEMIKFIKDSTANYGKVKLVLKKNRYFIESPFPEVLKTLLRDEVISRARITSEGANGDGFTISKAAGDNISTHDELLNEAEVAAAAEEKETHAFEIDSSQVENVKQRCLPNQLNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDENICRFTSDSKERFRGNAGVVVTTFNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQTVFCFEDVLNLSLSVDQALYVMNPTKFRACEFLIRYHETQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILQAFKTSKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVDCLFKFSTIVTMVSIAFCMNMLKLNSVITSLPPEDEGASLSYYYLEDQLALLGKVLSAGDDAVGLEQLEEDADDIALHNARRSAGSMSAMSGAKGMLYMEYSLLDQLTRYKLLICIIDGCPFYPHSTGRNKGQGQMKTSATPKKRAGRRVFKETRHPVYRGVRSRNNDKWVSEVRVPNDTKSRIWLGTYSTPEKAARAHDVASLALRGNSACLNFADSARRFRLPASNDAEEIRRAAAEAAESHEHQVSMGEGAGKKKKDMELEIEVEVAESVVLGMVDEPLRSPPPRLPRDDEWDDHVEDDAEVSLWSFPF 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3215 1000 Gene3D - 471 693 IPR027417 -
Sto6g3215 1000 SMART rav1_2 846 910 IPR001471 GO:0003700|GO:0006355
Sto6g3215 1000 PANTHER RAD25/XP-B DNA REPAIR HELICASE 714 790 - -
Sto6g3215 1000 MobiDBLite consensus disorder prediction 966 985 - -
Sto6g3215 1000 Pfam Helicase conserved C-terminal domain 74 197 IPR032830 -
Sto6g3215 1000 Pfam Type III restriction enzyme, res subunit 288 444 IPR006935 GO:0003677|GO:0005524|GO:0016787
Sto6g3215 1000 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 464 IPR027417 -
Sto6g3215 1000 ProSiteProfiles AP2/ERF domain profile. 846 904 IPR001471 GO:0003700|GO:0006355
Sto6g3215 1000 PANTHER DNA REPAIR HELICASE XPB1-LIKE 714 790 - -
Sto6g3215 1000 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 685 IPR027417 -
Sto6g3215 1000 PRINTS Xeroderma pigmentosum group B protein signature 529 544 - -
Sto6g3215 1000 PRINTS Xeroderma pigmentosum group B protein signature 158 177 - -
Sto6g3215 1000 PRINTS Xeroderma pigmentosum group B protein signature 72 92 - -
Sto6g3215 1000 PRINTS Xeroderma pigmentosum group B protein signature 652 675 - -
Sto6g3215 1000 PRINTS Xeroderma pigmentosum group B protein signature 301 323 - -
Sto6g3215 1000 PRINTS Xeroderma pigmentosum group B protein signature 615 640 - -
Sto6g3215 1000 PRINTS Xeroderma pigmentosum group B protein signature 270 296 - -
Sto6g3215 1000 PRINTS Xeroderma pigmentosum group B protein signature 549 571 - -
Sto6g3215 1000 PRINTS Xeroderma pigmentosum group B protein signature 596 614 - -
Sto6g3215 1000 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 534 680 IPR001650 -
Sto6g3215 1000 TIGRFAM rad25: DNA repair helicase rad25 228 689 IPR001161 GO:0003678|GO:0006289|GO:0006367
Sto6g3215 1000 Pfam AP2 domain 845 896 IPR001471 GO:0003700|GO:0006355
Sto6g3215 1000 PANTHER DNA REPAIR HELICASE XPB1-LIKE 47 688 - -
Sto6g3215 1000 CDD DEXHc_XPB 281 450 - -
Sto6g3215 1000 MobiDBLite consensus disorder prediction 816 836 - -
Sto6g3215 1000 MobiDBLite consensus disorder prediction 34 53 - -
Sto6g3215 1000 Gene3D AP2/ERF domain 846 905 IPR036955 GO:0003700|GO:0006355
Sto6g3215 1000 PRINTS Ethylene responsive element binding protein signature 870 886 IPR001471 GO:0003700|GO:0006355
Sto6g3215 1000 PRINTS Ethylene responsive element binding protein signature 847 858 IPR001471 GO:0003700|GO:0006355
Sto6g3215 1000 PANTHER RAD25/XP-B DNA REPAIR HELICASE 47 688 - -
Sto6g3215 1000 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 300 462 IPR014001 -
Sto6g3215 1000 CDD AP2 847 906 IPR001471 GO:0003700|GO:0006355
Sto6g3215 1000 SMART helicmild6 562 640 IPR001650 -
Sto6g3215 1000 Pfam ERCC3/RAD25/XPB C-terminal helicase 470 688 IPR032438 -
Sto6g3215 1000 Gene3D - 279 470 IPR027417 -
Sto6g3215 1000 MobiDBLite consensus disorder prediction 928 947 - -
Sto6g3215 1000 SMART ultradead3 285 466 IPR014001 -
Sto6g3215 1000 CDD SF2_C_XPB 481 662 - -
Sto6g3215 1000 SUPERFAMILY DNA-binding domain 846 906 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3215 Sto-Chr6 38706878 38715681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3215 830 974 AP2-EREBP Transcription Factor Family AT1G63030 55.862 1.53e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto6g3215 ERCC3_RAD25_C 1.5e-99 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3215 K10843 - gmx:100789550 1251.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3215 6 38706878 38715681 Sto6g3215 6 38706878 38715681 ECH