Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3210 ATGGGTGCATCGGGGAAGAAGCAGGGGGGTGTTGGGAGCGTAGAATTGGTTGAAttggagaagaggaagacaagGCTGGTTTGGATGGCGGAGGAGGTGGAGAGAAGATACCGGCACTACTGCAATCAGATGAAGGGAGTGGTATGGTCGTTGGAGGGAGTGGCGGGGAAGGGGTCGGCGAGAGTGTACTCGGCGCTGGCATTGAAGGCCATGTCTCGGCACTTCAAATGCTTGAAAGAAGGGATAATGGGTGAGGTTGAGGCCACCAGGAGATGTTTGGGAGAGAAGGATGGAGTGGGCTCAGGGGCAACCAAGGGTGAGACTCCGAGGCTGAAAGTGATCGACCAGGCCCTCAGGCAACAACGGGCCTTCCAACAAATGGGCCTCATCGACTCCCATCCATGGCGGCCCCAACGTGGCCTTCCCGAACGCTCCGTCTCCATCCTTCGGGCTTGGCTTTTCGACCATTTTCTCAACCCGTACCCAAGCGATGCTGATAAACATATATTAGCCCGCCAAACAGGCCTATCAAGAAGCCAggcacgtatatatatatatatatataatGTATCAAACTGGTTTATCAATGCAAGAGTGAGGCTGTGGAAGCCAATGGTGGAAGAGATGTACATGGAAGAAATCAAAGAGCAGAAAAGACGTCGGAGGGGGAGGCCCACATTATGA 684 0.5073 MGASGKKQGGVGSVELVELEKRKTRLVWMAEEVERRYRHYCNQMKGVVWSLEGVAGKGSARVYSALALKAMSRHFKCLKEGIMGEVEATRRCLGEKDGVGSGATKGETPRLKVIDQALRQQRAFQQMGLIDSHPWRPQRGLPERSVSILRAWLFDHFLNPYPSDADKHILARQTGLSRSQARIYIYIYNVSNWFINARVRLWKPMVEEMYMEEIKEQKRRRRGRPTL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3210 227 SMART prehox3 1 84 IPR006563 -
Sto6g3210 227 Pfam Homeobox KN domain 152 200 IPR008422 GO:0003677|GO:0006355
Sto6g3210 227 Pfam Associated with HOX 10 82 IPR006563 -
Sto6g3210 227 SUPERFAMILY Homeodomain-like 136 211 IPR009057 -
Sto6g3210 227 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 220 - -
Sto6g3210 227 SMART HOX_1 135 208 IPR001356 GO:0003677
Sto6g3210 227 CDD homeodomain 135 205 IPR001356 GO:0003677
Sto6g3210 227 ProSiteProfiles 'Homeobox' domain profile. 132 204 IPR001356 GO:0003677
Sto6g3210 227 Coils Coil 16 36 - -
Sto6g3210 227 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 6 220 - -
Sto6g3210 227 Gene3D - 130 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3210 Sto-Chr6 38655207 38656330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3210 13 218 Homeobox Transcription Factor Family AT5G41410 59.809 1.82e-86 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3210 - - lang:109331282 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3210 6 38655207 38656330 Sto6g3210 6 38655207 38656330 ECH