Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3170 CTGCAGGCCACACGCTCAGCGCCACTCCCTCATATTCTCGCACTCGAGCTTCGCTCTCGCACTGATGATCTCTGGGTCGTTGCTTGGTCCGGAGCCACATCCGCTTCTGCCGCCATAGAGGTTTCTGCAGAATGCATTTCCTTGCCACATCATGCTAAAGTTCAAGTAAGAGCTGCTTCTAATGTACCGCATGCTTCTCTAGTTACAATAGAACCCCATACAGAAGATGACTGGGAAATTTTGGAGCTGAACTCAGAGCAAGCTGAGGCAGCAATTTTAAACCAGCTCAGGATTGTTTACGAAGGGATGAGATTTCCTTTGTGGTTGCATGGTCACACAATGATTACATTCAATGTGGCTTCTGTTTTTCCCAAGAAAGCGCGCCAAGTGCTCCAAAATGCTATAGCACTTAAAGTTGTGCATGCTACACATATTAGGGCACAATTGAGTAACTCTCCTAATGATTTTTGTATTACTGTAATATTTGGAGATACTACAGATTGGTCAATCCATAATGAAGTTATTAATGTTGTTCTGGATGAATCCCATtacaaagaagatgaagaggttGCAAATCAGTCAGAAAATAAGAAAGGATTGCAGCATCTTCTAAGATTCTGGTATATTGCACAACTTGATGCAATTACTTCCTTTACTGGTATGGAGGTTAATGCACTGaaaacagaaaaaacgACAGCTGAAATACAATTTTTGTTGACTATTGGTGAAGATTCTCTGCATCATGGAAAACATAATGCATATGAAGTTGCTCTTGGTGAAAGAAACAAGGTGAATAGTAATCAGGAAGATCTCCAGCAGTTTAAAAATCTGAAGTTTGGTGGTCCTGTCTCCTTTCAGACTATAGAAGATATGATCTCTAAAGAACACATTAGTTCAGAAGTAACTTCCCTTGGCTGGATGGAAGCTACTGTTTCTGATGTTAAAATAGTAGGGATGATGGTATTGTTATCTTCTGCTTCTGGTACGTGGTTTGATTTTTACAACTTACCACTACCTGGACATGTTCTTATATATGGGCCTTCAGTCCCAATGATCCAAAAGGAAGTTACTAACATCATAATGGAAGCCTTAGATCATGCACCTTCTATTGTCATCTTTGACGATCTTGATAGCATAATTTCTACCTCTGACTCAGAAGGATCTCAACCCTCAATATCAGCTGCTGGACTCGCAGGTTTTCTGGTTGACATTATTGATGAATATGGGAGTGAAAGTTGGACCGCTGCCATATTCAGACATTTTGGTTTTAGCTCCAGAAAATGTTCTGCATCTCTATGCAAGCAATGGTTGTGTAAATATATGCTACCTTCTTGCTTGAGTAAGGGTCAGCTTTTGCGTGACTTGGAATTTCCAGAAACAGCTTCTCTTTCCCATGATATAAAAATTACTGGCCTGGCTGATGCAGTTGGGGGGCGTGTCAATGTGATAGTAAATAATATGAAGATGTTTAGATGTGCATTACGACAAAGTCCATCATCTTTATTAGCTAATGATTGCATCACAGCACTTGCTGAGGGGCTTAGTTTCAGCTTCTACAGATATTTGCTTGGTCATCTCTGGAAAGATGGTGACCCTGCTCATTTAAGGGTTGCTGACTCTGGTGTTGATTCAGAATGGGACTCTTTCTGTCGTGTAATTATGCAATTGTGCAGAGAATCTAACTTGATGTCTCAAAAGCATTTGACTTCAGTATCACACTCAGCTTGGGACTTTCTTCTTAGCAGCCAATTTCATAGGAACTTCTGCAAAATAAACACCATTTCTGGAATATCTCGTGCAGCATCACTTGACCAACAGGAGACAAATTCCCCTAGTTCAGCAATGGATGGTACACAAATTTCTGCAAATCCATTTAATTGTGAACTGTTAATGGAAACTCTGGAATCTCTTCATGCAGTCTATGAGAGCCTGAAACTGGATAATCTTCGAAAAGGGGACTTGGAGCTTTTAGCTATTCTCTTATGCAACATTGCTGAATATCTGGGTGAGGAAAACTACTTGGATCATTATATTCGGGATTTCCCTGGCCTTTCTACACAGTTCCTGATATCTAGAACCTCCATTTCCTGGAAAAGGAAAACTCCCCCAAATTTATTCAGATGGCTTGAGAAATGCTTGCAACATGGATGTACTTCTGCTAATATCAAAGATCTTCCTCCTTTAATCTGTAAAGATGGAAGCTCTGTGGCGAGCTGGGCTCGGAAAATAGTCTCTTTTTATAGTATATTATCTGGTGCTAAATTTTTTGGAAAGAAGCTTTCTTCTGGTGTTTACTGTAATGTTGCCACGGGGACGCATTGTTCAAAAGAGGAACTGACTGTATTGGCAATGGTTGGGGAGAGGTTTGGACTACAACAGCTAGACTCACTCCCCTCCGGTGTATCTCTTCCACTGCGTCATATTGGTAAAACAAAGGTATTTCTTCGAGCTGGTCAAATGGCAGAACTAGATACCCGTAGAAGCGAGATCTTAGGAAAGTCAGCAAGCATTATTCAGAGGAAAGCTGCAAGAGAAACTGGAGCTCTCCAAGCTGCCAAAAATAAGCTTGAAAAGCAGGTTGAAGACCTTACATTGAGGTTGCAGCTGGAGAAACGCATGAGGGTTGACATGGTAGAAGCCAAaacacaagaaaataaaagattacAGTCTTCTTTGCATGAGATTCAACTTCAGTTTAAAGAAGCTAAGGCATTGCTTGAAAAGGAGCGTGAGGCTGCGAAGAGGGCAGCAGAGATTGTGCCAAGCATAAAGGAGGTTCCAGTCATTGACCATGCATTGTTGGAGAAGCTTACTAGTGAAAATGAGAAACTCAAGACCCTGGTGTGTTCACTGGAAAAGAGGTATGAAGAGGCAAACAAAATTAGTGGAGAAAGGTTGAAGCAAGCTATGGAGGCAGAATCAAAAATAATTCAGTTGAAGACTTCCATGCAAAGGCTTGAAGAGAAGTTCTCAAATAGTGAATCTGAAAACCAAGTTCTGCAGTACCAACCTCTGAGAAACCCATCTGTTAAAAAGATGTCTGAGCACCTCTCTATTCCTGTAGCTGAGAAGCAGGAAAATGGTCACCCTGAGGTAGAAGAGCATAAAGCTGGTGCGAGTACTATTACTGCATTTTCTCAGCACATGGCGCTGTCAGTTTTGTTCATTGAACATGTGATCTCTGTACTTAGCCAGACGCCTATCCTCAAAGGTGATGTAGATAGAGTTGAGGATAGCCATGTTTTTGACAGTCAGACAGAAGATGCTGCATTTGTATTGGCAAGTCGTGAGGCTATGTGTCTGGGAGATAGGGTAATAATGTATCTTCCACGTTGTATGGACACGAATTCTGAAGTTAGAAAGATATCTGCTCAAATTCTTGATCAACTCTTCAGCATTTCTCTCTCACTTCCAAGGTCTGCAGCTTCTTGTATATCTTCTGAACATAAGGAACTGTCCTACAGTGCCTTGTCTTCTCTTGAGGATGTCATAGCCATCTTGAGGAATGCAATTGGCAATACACTGCGTGGTTGCTCGGCAGCTATATGCGACAAGGTCAAGCAGTCCGCCGAAGGAGCTATTCAAGCTGTTATTGAGACAACCCAATCATTGATATCTGCTGCTGTTCAGGTAAATGATAAGCATTTGCGCATGGAGACTCTTGGTGCTGCATTTTCTCAGCACATGGCGCTGTCAGTTTTGTTCATTGAACATGTGATCTCTGTACTTAGAAAGACGCCTATCCTCAAAGGTGATGTAGATAGAGTTGAGGATAGCCATGTTTTTGACAGTCAGACAGAAGATGCTGCATTTGTATTGGCAAGTCGTGAGGCTATGTGTCTGGGAGATAGGGTAATAATGTATCTTCCACGTTGTATGGACACGAATTCTGAAGTTAGAAAGATATCTGCTCAAATTCTTGATCAACTCTTCAGCATTTCTCTCTCACTTCCAAGGTCTGCAGCTTCTTGTATATCTTCTGAACATAAGGAACTGTCCTACAGTGCCTTGTCTTCTCTTGAGGATGTCATAGCCATCTTGAGGAATGCAATTGGCAAAACACTGCGTGGTTGCTCGGCAGCTATATGCGACAAGGTCAAGCAGTCCGCCGAAGGAGCTATTCAAGCTGTTATTGAGACAACCCAATCATTGATATCTGCTGCTGTTCAGGTAAATGATAAGCATTTGCGCATGGAGACTCTTGGTGCTGCATTTTCTCAGCACATGGCGCTGTCAGTTTTGTTCATTGAACATGTGATCTCTGTACTTAGAAAGACGCCTATCCTCAAAGGTGATGTAGATAGAGTTGAGGATAGCCATGTTTTTGACAGTCAGACAGAAGATGGTATGCTGCAAGCTGCAATTTTTGCTCTTACTGCTTTCTTCAGATTCTTGATCAACTCTTCAGCATTTCTCTCTCACTTCCAAGGTCTGCAGCTTCTTGTATATCTTCTGAACATAAGTACGGCTCTTTCTATGGCGATGGTATTATGTTCTCATGGAATCATGAATGGCAATATGACTGTTGGTGATTTGGTGATGGTGAATGGACTTCTCTTCCagctctctcttcctctcactTTCCTTGGTAGTGTATATCGTGAGACTATGCAGAGTCTAGTCGACATGAAGTCCATGTTTCAGTTACTGGAGGTGGCGCCTGCAAAGGCACGGGACTTTGATGTCAACAGTCTGAGTTAtgTGTGCTCTGGATATTCTTTTAAGAAGATTCTGATTTCTGAGCAACTAGATTTCTTCTTTGCTCTGTCTGGCTTGCATTTGGTTATTTCAGGTGGCGCTTTTGAAGTCATGCCATCTTTGGTGTCTGGTTTTGGTTACCTTGTTTAA 4848 0.4121 LQATRSAPLPHILALELRSRTDDLWVVAWSGATSASAAIEVSAECISLPHHAKVQVRAASNVPHASLVTIEPHTEDDWEILELNSEQAEAAILNQLRIVYEGMRFPLWLHGHTMITFNVASVFPKKARQVLQNAIALKVVHATHIRAQLSNSPNDFCITVIFGDTTDWSIHNEVINVVLDESHYKEDEEVANQSENKKGLQHLLRFWYIAQLDAITSFTGMEVNALKTEKTTAEIQFLLTIGEDSLHHGKHNAYEVALGERNKVNSNQEDLQQFKNLKFGGPVSFQTIEDMISKEHISSEVTSLGWMEATVSDVKIVGMMVLLSSASGTWFDFYNLPLPGHVLIYGPSVPMIQKEVTNIIMEALDHAPSIVIFDDLDSIISTSDSEGSQPSISAAGLAGFLVDIIDEYGSESWTAAIFRHFGFSSRKCSASLCKQWLCKYMLPSCLSKGQLLRDLEFPETASLSHDIKITGLADAVGGRVNVIVNNMKMFRCALRQSPSSLLANDCITALAEGLSFSFYRYLLGHLWKDGDPAHLRVADSGVDSEWDSFCRVIMQLCRESNLMSQKHLTSVSHSAWDFLLSSQFHRNFCKINTISGISRAASLDQQETNSPSSAMDGTQISANPFNCELLMETLESLHAVYESLKLDNLRKGDLELLAILLCNIAEYLGEENYLDHYIRDFPGLSTQFLISRTSISWKRKTPPNLFRWLEKCLQHGCTSANIKDLPPLICKDGSSVASWARKIVSFYSILSGAKFFGKKLSSGVYCNVATGTHCSKEELTVLAMVGERFGLQQLDSLPSGVSLPLRHIGKTKVFLRAGQMAELDTRRSEILGKSASIIQRKAARETGALQAAKNKLEKQVEDLTLRLQLEKRMRVDMVEAKTQENKRLQSSLHEIQLQFKEAKALLEKEREAAKRAAEIVPSIKEVPVIDHALLEKLTSENEKLKTLVCSLEKRYEEANKISGERLKQAMEAESKIIQLKTSMQRLEEKFSNSESENQVLQYQPLRNPSVKKMSEHLSIPVAEKQENGHPEVEEHKAGASTITAFSQHMALSVLFIEHVISVLSQTPILKGDVDRVEDSHVFDSQTEDAAFVLASREAMCLGDRVIMYLPRCMDTNSEVRKISAQILDQLFSISLSLPRSAASCISSEHKELSYSALSSLEDVIAILRNAIGNTLRGCSAAICDKVKQSAEGAIQAVIETTQSLISAAVQVNDKHLRMETLGAAFSQHMALSVLFIEHVISVLRKTPILKGDVDRVEDSHVFDSQTEDAAFVLASREAMCLGDRVIMYLPRCMDTNSEVRKISAQILDQLFSISLSLPRSAASCISSEHKELSYSALSSLEDVIAILRNAIGKTLRGCSAAICDKVKQSAEGAIQAVIETTQSLISAAVQVNDKHLRMETLGAAFSQHMALSVLFIEHVISVLRKTPILKGDVDRVEDSHVFDSQTEDGMLQAAIFALTAFFRFLINSSAFLSHFQGLQLLVYLLNISTALSMAMVLCSHGIMNGNMTVGDLVMVNGLLFQLSLPLTFLGSVYRETMQSLVDMKSMFQLLEVAPAKARDFDVNSLSYVCSGYSFKKILISEQLDFFFALSGLHLVISGGAFEVMPSLVSGFGYLV 1615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3170 1615 Gene3D ABC transporter type 1, transmembrane domain 1446 1555 IPR036640 GO:0005524|GO:0016021
Sto6g3170 1615 Gene3D - 63 146 - -
Sto6g3170 1615 Coils Coil 846 873 - -
Sto6g3170 1615 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1480 1538 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto6g3170 1615 Coils Coil 969 1003 - -
Sto6g3170 1615 Gene3D - 793 875 - -
Sto6g3170 1615 PANTHER BNAC02G02260D PROTEIN 433 808 - -
Sto6g3170 1615 Coils Coil 878 912 - -
Sto6g3170 1615 PANTHER MEIOTIC CHECKPOINT REGULATOR TSG24 FAMILY MEMBER 433 808 IPR024990 GO:0005680
Sto6g3170 1615 SUPERFAMILY ABC transporter transmembrane region 1469 1554 IPR036640 GO:0005524|GO:0016021
Sto6g3170 1615 Pfam Anaphase-promoting complex subunit 1 middle domain 571 806 IPR046794 -
Sto6g3170 1615 Pfam Peroxisome biogenesis factor 1, N-terminal 68 132 IPR015342 GO:0005524|GO:0005777|GO:0007031
Sto6g3170 1615 SUPERFAMILY Cdc48 domain 2-like 63 134 IPR029067 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3170 Sto-Chr6 38345623 38364375 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3170 807 841 Myosins gene family AT1G04160 85.714 5.77e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3170 K03348 - lja:Lj2g3v2760040.1 531.561