Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3168 ATGAAAGGGAGTAGTGGTAGTGGAAAGAAGCAGACTGGTTCGTCGCCTTGTGCTGCGTGTAAGCTTCTTCGAAGAAGGTGTGATAAACAATGTGTGTTCGCTCCATATTTCCCAGACCATCACCCTCACAAGTTCATTAATGTCCACAAAGTGTACGATGCCAGTAACGTCAACAAGATGCTTCAGAAGCTACCCGTACATCAGCGAGGAGACGCAGTGAGCAGTATGGTGTATGAAGCCAACGCGCAAGTGCAAGACCCAGTGTATGGGTGCGTTAGTGCCATCTCTTCTCTTCAGCACCAACTTGATGGGCTTCGGGCCCAACTGGCTCTGGCCCAGACCGAGTGGATACTGGATAGTGATGATGTGACTTATCCTGCGGCAACAATACATATGAAGGCAGGTTCTATTGCCATTTCAACTGTTTTGATAATGGATGTTGTTTCTCAGTGA 453 0.479 MKGSSGSGKKQTGSSPCAACKLLRRRCDKQCVFAPYFPDHHPHKFINVHKVYDASNVNKMLQKLPVHQRGDAVSSMVYEANAQVQDPVYGCVSAISSLQHQLDGLRAQLALAQTEWILDSDDVTYPAATIHMKAGSIAISTVLIMDVVSQ 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3168 150 Coils Coil 95 115 - -
Sto6g3168 150 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Sto6g3168 150 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
Sto6g3168 150 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 8 117 - -
Sto6g3168 150 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3168 Sto-Chr6 38328742 38330166 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3168 7 103 AS2 family AT1G31320 75.258 2.25e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto6g3168 LOB 1.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3168 - - cpap:110806897 180.259