LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto6g3167	ATGGAGTTAGAGGCCACACGCTCAGCGCCACTCCCTCATATTCTCGCACTCGAGCTTCGCTCTCGCACTGATGATCTCTGGGTCGTTGCTTGGTCCGGAGCCACATCCGCTTCTGCCGCCATAGAGGTTTCTGCAGAATGCATTTCCTTGCCACATCATGCTAAAGTTCAAGTAAGAGCTGCTTCTAATGTACCGCATGCTTCTCTAGTTACAATAGAACCCCATACAGAAGATGACTGGGAAATTTTGGAGCTGAACTCAGAGCAAGCTGAGGCAGCAATTTTAAACCAGCTCAGGATTGTTTACGAAGGGATGAGATTTCCTTTGTGGTTGCATGGTCACACAATGATTACATTCAATGTGGCTTCTGTTTTTCCCAAGAAAGCGGTGGATACTACAGATTGGTCAATCCATAATGAATTTATTAATGTTGTTCTGGATGAATCCCATtacaaagaagatgaagaggttGCAAATCAGTCAGAAAATAAGAAAGGATTGCAGCATCTTCTAAGATTCTGGTATATTGCACAACTTGATGCAATTACTTCCTTTACTGGTTTGGAGGTTAATGCATTGaaaacagaaaaaacgACAGCTGAAATACAATTTTTGTTGACTATTGGTGAAGATTCTCTGCATCATGGAAAACATAATGCATATGAAGTTGCTCTTGGTGAAAGAAACAAGGTGAATAGTAATCAGGAAGATCTCCAGCAGTTTAAAAATCTGAAGTTTGGTGGTCCTGTCTCCTTTCAGACTATAGAAGATATGATCTCTAAAGAACACATTAGTTCAGAAGTAACTTCCCTTGGCTGGATGGAAGCTACTGTTTGTGATGTTAAAATTGTAGGGATGATGGTATTGTTATCTTCTGCTTCTGGTACGTGGTTTGATTTTTACAACTTACCACTACCTGGACATGTTCTTATATATGGGCCTTCAGGCTCTGGCAAAACTTTACTAGCAAGGACTGTTGCAAAATGCCTTGAGAAACATGAAGACATCGTCCCAATGATCCAAAAGGAAGTTACTAACATCATAATGGAAGCCTTAGATCATGCACCTTCTATTGTCATCTTTGACGATCTTGATAGCATAATTTCTACCTCTGACTCAGAAGGATCTCAACCCTCAATATCAGCTGCTGGACTCGCAGGTTTTCTGGTTGACATTATTGATGAATATGGGAGTGAAAGTTGGACCGCTGCCATATTCAGACATTTTGGTTTTAGCTCCAGAAAATGTTCTGCATCTCTATGCAAGCAATGCTTGTGTAAATATATGCTACCTTCTTGCTTGAGTAAGGGTCAGCTTTTGCGTGACTTGGAATTTCCAGAAACAGCTTCTCTTTCCCATGATATAAAAATTACTGGCCTGGCTGATGCAGTTGGGGGGCGTGTCAATGTGATAGTAAATATTATGAAGATGTTTAGATGTGCATTACGACAAAGTCCATCATCTTTATTAGCTAATGATTGCATCACAGCACTTGCTGAGGGGCTTAGTTTCAGCTTCTACAGATATTTGCTTGGTCATCTCTGGAAAGATGGTGACCCTGCTCATTTAACGGTTGCTGACTCTGGTGTTGATTCAGAATGGGACTCTTTCTGTCGTGTAATTATGCAATTGTGCAGAGAATCTAACTTGATGTCTCAAAAGCATTTGACTTCAGTATCACACTCAGCTTGGGACTTTCTTCTTAGCAGCCAATTTCATAGGAACTTCTGCAAAATAAACACCATTTCTGGAATATCTCGTGCAGCATCACTTGACCAACAGGAGACAAATTCCCCTAGTTCAGCAATGGATGGTACACAAATTTCTGCAAATCCATTTAATTGTGAACTGTTAATGGAAACTCTGGAATCTCTTCATGCAGTCTATGAGAGCCTGAAACTGGATAATCTTCGAAAAGGGAAAACTCCCCCAAATTTATTCAGATGGCTTGAGAAATGCTTGCAACATGGATGTACTTCTGCTAATATCAAAGATCTTCCTCCTTTAATCTGTAAAGATGGAAGCTCTGTGGCGAGCTGGGCTCGGAAAATAGTCTCTTTTTATAGTATATTATCTGGTGCTAAATTTTTTGGAAAGAAGCTTTCTTCTGGTGTTTACTGTAATGTTGCCACGGGGACGCATTGTTCAAAAGAGGAACTGACTGTATTGGCAATGGTTGGGGAGAGGTTTGGACTACAACAGCTAGACTCACTCCCCTCCAGTGTATCTCTTCCACTGCGTCATGCGTTAGATAAGTGTCGAGATTCTCCTCCCAATGACTGGCCATCGGCTGCTTATGTCCTTCTTGGTCGACAAGATTTGGCAATGTCATCTTTGACTCGTGAATGCAAGTATAGGGAAATTGAAAGACCAACCAATGTGAATGTAATCTCTATGTCTACGCCTTATATGCTGAACCTGCATCCAGTGACAATATCTTCTACTATTTCTGATGCAATTGGGTTGGAAGGTACAAAGTTTGAGGATACAGATTCAATTGGTAAAACAAAGGTATTTCTTCGAGCTGGTCAAATGGCAGAACTAGATACCCGTAGAAGCGAGATCTTAGGAAAGTCAGCAAGCATTATTCAGAGGAAAGTTCGCTCTTTCTTGGCTCGCCGAACTTGGTtttaa	2634	0.4058	MELEATRSAPLPHILALELRSRTDDLWVVAWSGATSASAAIEVSAECISLPHHAKVQVRAASNVPHASLVTIEPHTEDDWEILELNSEQAEAAILNQLRIVYEGMRFPLWLHGHTMITFNVASVFPKKAVDTTDWSIHNEFINVVLDESHYKEDEEVANQSENKKGLQHLLRFWYIAQLDAITSFTGLEVNALKTEKTTAEIQFLLTIGEDSLHHGKHNAYEVALGERNKVNSNQEDLQQFKNLKFGGPVSFQTIEDMISKEHISSEVTSLGWMEATVCDVKIVGMMVLLSSASGTWFDFYNLPLPGHVLIYGPSGSGKTLLARTVAKCLEKHEDIVPMIQKEVTNIIMEALDHAPSIVIFDDLDSIISTSDSEGSQPSISAAGLAGFLVDIIDEYGSESWTAAIFRHFGFSSRKCSASLCKQCLCKYMLPSCLSKGQLLRDLEFPETASLSHDIKITGLADAVGGRVNVIVNIMKMFRCALRQSPSSLLANDCITALAEGLSFSFYRYLLGHLWKDGDPAHLTVADSGVDSEWDSFCRVIMQLCRESNLMSQKHLTSVSHSAWDFLLSSQFHRNFCKINTISGISRAASLDQQETNSPSSAMDGTQISANPFNCELLMETLESLHAVYESLKLDNLRKGKTPPNLFRWLEKCLQHGCTSANIKDLPPLICKDGSSVASWARKIVSFYSILSGAKFFGKKLSSGVYCNVATGTHCSKEELTVLAMVGERFGLQQLDSLPSSVSLPLRHALDKCRDSPPNDWPSAAYVLLGRQDLAMSSLTRECKYREIERPTNVNVISMSTPYMLNLHPVTISSTISDAIGLEGTKFEDTDSIGKTKVFLRAGQMAELDTRRSEILGKSASIIQRKVRSFLARRTWF	877

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto6g3167	877	PANTHER	MEIOTIC CHECKPOINT REGULATOR TSG24 FAMILY MEMBER	421	639	IPR024990	GO:0005680
	Sto6g3167	877	PANTHER	MEIOTIC CHECKPOINT REGULATOR TSG24 FAMILY MEMBER	641	834	IPR024990	GO:0005680
	Sto6g3167	877	PANTHER	BNAC02G02260D PROTEIN	641	834	-	-
	Sto6g3167	877	PANTHER	BNAC02G02260D PROTEIN	421	639	-	-
	Sto6g3167	877	Pfam	Anaphase-promoting complex subunit 1 middle domain	716	775	IPR046794	-
	Sto6g3167	877	Gene3D	-	798	877	-	-
	Sto6g3167	877	SUPERFAMILY	Cdc48 domain 2-like	65	128	IPR029067	-
	Sto6g3167	877	SMART	AAA_5	305	416	IPR003593	-
	Sto6g3167	877	Pfam	ATPase family associated with various cellular activities (AAA)	309	376	IPR003959	GO:0005524\|GO:0016887
	Sto6g3167	877	CDD	AAA	303	367	-	-
	Sto6g3167	877	ProSiteProfiles	IQ motif profile.	858	877	IPR000048	GO:0005515
	Sto6g3167	877	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	812	876	IPR027417	-
	Sto6g3167	877	Pfam	Peroxisome biogenesis factor 1, N-terminal	70	128	IPR015342	GO:0005524\|GO:0005777\|GO:0007031
	Sto6g3167	877	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	299	414	IPR027417	-
	Sto6g3167	877	Gene3D	-	65	145	-	-
	Sto6g3167	877	Gene3D	-	282	408	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto6g3167	Sto-Chr6	38317791	38326300	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto6g3167	818	876	Myosins gene family	AT5G43900	67.797	4.45e-17	84.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto6g3167	K03348		-	gmx:100778607	598.971