Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3141 ATGAATCCGCCTTCAATACAATACACCAAGCACCTTCACTACACTAAGTTCGTACCACCAGAGGAGCAACACCGCCTCTCCCAAGCCAATATGAAGTATCCAAAAGTTGTTAGGATTTGTGTGACGGACAGCGACGCCACCGACTCCTCCAGCGACGAAGAAGAACGGGAGATTTTGTCCACGCGCCGCCGAGTCAGGAAGTTCGTCAACGAGATTACCATCGAGTGGAGCTCCAGCAGCAACAACGACGTCGTCAACGTTCCGAAGAGGAAGGTGAGTAAGAGTAACAGAAAGAGCGCGAGTGGTAGTAGGAGTAGAGTGGGGATGAAGGTATCGACGGGGAAGAAGTTCAGAGGAGTGAGGCAGAGGCCGTGGGGAAAATGGGCGGCGGAGATCAGGGATCCTCTGCGACGTGTACGGTTGTGGTTAGGTACGTACGAAACCGCAGAGGAAGCTGCCATGGTGTACGACAAAGCAGCCATCAAGCTGCGCGGAGCAGAAGCACTGACCAATTTCATCACGCCACCGGGGAAGAAGGAAGCCGAAGAAGAACATCAGAAGAACTTGAGTTCTCCGAAATCTGTGCTTCATCACTCTTTGTCAGAGGAAGCTGAAGAATCTGTGATGACCAAAGATGAAATGAGTGAACATTGTCGGGATGAATCGTCGTCTTTCTCCGAGTTTCCGGGCGATATATTCGACTTCCAAATGACCTCCGTGCCGGAAAACATATTCAACACCGGCACCGCCGCCGTCAGCGTCCCGGAAACTGTCTACTCCGATACATTTCTGGGTAGTTGTGAGAATTTCGGGTTGGATGACGTGGATTTCGGTTTcggatttggatttggattttcGAGTTGGCATAGAGATGAAGACTATTTCCAAGACATCGGAGATTTATTTGTATCAGATCCGTGGCCAAATGGAGGCGTGTTTCCAAGTTGCGAAGAGGAAATCAAAGAGGATCTTGAAGATGCCAAGTGGCAGAGAAATGGACGACACTggggagagaaagagaagagagagatcATGAAAATGCGTTTTGGCTCTTTTGGTGGATATACTAATTCTGACATTACCAGGGGTGGAGCCTCATGCTACTTGCATACTTTTATTGGCActaccctctctctcttctatggaTAA 1149 0.4648 MNPPSIQYTKHLHYTKFVPPEEQHRLSQANMKYPKVVRICVTDSDATDSSSDEEEREILSTRRRVRKFVNEITIEWSSSSNNDVVNVPKRKVSKSNRKSASGSRSRVGMKVSTGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYETAEEAAMVYDKAAIKLRGAEALTNFITPPGKKEAEEEHQKNLSSPKSVLHHSLSEEAEESVMTKDEMSEHCRDESSSFSEFPGDIFDFQMTSVPENIFNTGTAAVSVPETVYSDTFLGSCENFGLDDVDFGFGFGFGFSSWHRDEDYFQDIGDLFVSDPWPNGGVFPSCEEEIKEDLEDAKWQRNGRHWGEKEKREIMKMRFGSFGGYTNSDITRGGASCYLHTFIGTTLSLFYG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3141 382 MobiDBLite consensus disorder prediction 177 191 - -
Sto6g3141 382 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Sto6g3141 382 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 306 - -
Sto6g3141 382 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Sto6g3141 382 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Sto6g3141 382 MobiDBLite consensus disorder prediction 177 221 - -
Sto6g3141 382 MobiDBLite consensus disorder prediction 88 112 - -
Sto6g3141 382 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Sto6g3141 382 Gene3D AP2/ERF domain 115 174 IPR036955 GO:0003700|GO:0006355
Sto6g3141 382 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Sto6g3141 382 CDD AP2 115 172 IPR001471 GO:0003700|GO:0006355
Sto6g3141 382 MobiDBLite consensus disorder prediction 198 221 - -
Sto6g3141 382 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 5 306 - -
Sto6g3141 382 SUPERFAMILY DNA-binding domain 116 172 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3141 Sto-Chr6 38161889 38164312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3141 1 306 AP2-EREBP Transcription Factor Family AT4G23750 39.669 8.52e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sto6g3141 AP2 6.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3141 - - twl:120016009 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3141 6 38161889 38164312 Sto6g3141 6 38161889 38164312 ECH