Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3132 ATGGCTGAGATAAGTTCTGGAGTGGCCTTACAAGTGGATCAAGTCCCTACGAAGAGGTCACGGAGCCGAAGGGCATTGAAGGAGAAAAACCCATCCACAAATGAGCCCAACGCGATGGCGAAGAAGGTGTCTGAGCCCACGCCGGCGATTTCAGTGGAATCGGAGTCCGTTAAGGAGAACCTTCAGAGTGTTTCTCAACCCAAGAAGGGAAAAGCTGCTGCGTCCAAAAAGCCTTCGAAGCAATCGTTTGAGAAAGATTTGTTGGAGATGCAGGAGATGCTTCAGAAGCTGCGTCTTGAGAAGGAGCAGACGGAAGAGCTCTTGAAGGCCAAAGACGAGATGCTGAAGCAGAAGGATGAAGAGCTCGGTGAGCGTGGCCGGGAGCAAGAGAAGCTTCAGATGGAGTTGAAAAAATTGCAGAAGCTCAAGGAATTCAAACCTACCATGAATTTGCCTGTGGTATGGGACAAGGAGCAAGAAAAGAaggacaagaagaagaagaatggatgCAATGAGAAGAAAAGGCCTTCTCCACCTTACATTTTGTGGAGCAAAGATCAATGGGCAGAGATTAAGAAAGCAAACCCAGAGGCAGAATTCAAGGATATCACAAACATGTTAGGGGCTAAATGGAAGACCATCAGTGAAGAAGAGAAGCAGCCTTATGAGGAGAAGTATCTTATTGAGAAAGAAGCGTATCTGCGAGTAGTTGCAAAGGAGAAACGTGAAAGTGAGGCAATGAAGCTATTGGAGGAGGAGCAAAAGCAGAAGACTGCCATGGAATTGCTTGAGCAGTATATGCAGTTCAAGCTGGAGACAGAAAAAGAATGCAAGAAGAACAAAAAAGAGAAGGATCCATTGAAACCAAAGCATCCTGTGTCAGCTTTCATCTTGTACACAAATGATAGGCGAGCTGCTATTCTTGCAGAGAATAAGACTATCCTGGAGGTTTCCAAGATTACAGGTGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGGCCTTATGAAGAGATAGCAAAGAAGAACAAGGAGAAATATGTTCAAGAAATGGAAGCCTATAAACAGAAGAAAGACGAAGAGTCTGCGAATCTCaaaaaagaagaggaggagcagATGAAACTACAAAAACAGGAAGCCTTGCAACTgctgaagaagaaggagaaaacaGAAAATCTGATTAAGAaatcaaagaagaagaaacagaacaaGGAAGATAAGAATTCTGATCCTAACAGGCCTAAGAGGCCACCATCCTCATTTATCCTATTCAGCAAAGAAGCAAGAAAGAGTATACAAGAGGAAAGACTAGAAATCAACAACTCCACCATGAATGCACTTATATCTGTAAAATGGAAGGAACTGAGTGAGGCAGAGAGGCAAGCTTGGAATAACAAAGCTGCTGAAGCAATGGATGTATACAAGAAAGAATTGGAGGAATACAACAAATCCATTGTTGCGAAGTTGAAGACGGAAGAATGA 1482 0.4082 MAEISSGVALQVDQVPTKRSRSRRALKEKNPSTNEPNAMAKKVSEPTPAISVESESVKENLQSVSQPKKGKAAASKKPSKQSFEKDLLEMQEMLQKLRLEKEQTEELLKAKDEMLKQKDEELGERGREQEKLQMELKKLQKLKEFKPTMNLPVVWDKEQEKKDKKKKNGCNEKKRPSPPYILWSKDQWAEIKKANPEAEFKDITNMLGAKWKTISEEEKQPYEEKYLIEKEAYLRVVAKEKRESEAMKLLEEEQKQKTAMELLEQYMQFKLETEKECKKNKKEKDPLKPKHPVSAFILYTNDRRAAILAENKTILEVSKITGEEWKNMTEEQKRPYEEIAKKNKEKYVQEMEAYKQKKDEESANLKKEEEEQMKLQKQEALQLLKKKEKTENLIKKSKKKKQNKEDKNSDPNRPKRPPSSFILFSKEARKSIQEERLEINNSTMNALISVKWKELSEAERQAWNNKAAEAMDVYKKELEEYNKSIVAKLKTEE 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3132 493 Pfam HMG (high mobility group) box 174 235 IPR009071 -
Sto6g3132 493 Pfam HMG (high mobility group) box 289 355 IPR009071 -
Sto6g3132 493 Pfam HMG (high mobility group) box 414 482 IPR009071 -
Sto6g3132 493 Gene3D High mobility group box domain 393 485 IPR036910 -
Sto6g3132 493 SUPERFAMILY HMG-box 276 361 IPR036910 -
Sto6g3132 493 MobiDBLite consensus disorder prediction 1 84 - -
Sto6g3132 493 Gene3D High mobility group box domain 272 372 IPR036910 -
Sto6g3132 493 MobiDBLite consensus disorder prediction 155 173 - -
Sto6g3132 493 SUPERFAMILY HMG-box 159 236 IPR036910 -
Sto6g3132 493 MobiDBLite consensus disorder prediction 153 180 - -
Sto6g3132 493 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 289 355 IPR009071 -
Sto6g3132 493 Gene3D High mobility group box domain 157 239 IPR036910 -
Sto6g3132 493 CDD HMG-box 289 352 - -
Sto6g3132 493 MobiDBLite consensus disorder prediction 49 69 - -
Sto6g3132 493 CDD HMG-box 414 479 - -
Sto6g3132 493 MobiDBLite consensus disorder prediction 352 391 - -
Sto6g3132 493 Coils Coil 464 484 - -
Sto6g3132 493 Coils Coil 80 121 - -
Sto6g3132 493 MobiDBLite consensus disorder prediction 352 422 - -
Sto6g3132 493 SUPERFAMILY HMG-box 409 484 IPR036910 -
Sto6g3132 493 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 13 490 IPR044601 GO:0003677
Sto6g3132 493 CDD HMGB-UBF_HMG-box 174 238 - -
Sto6g3132 493 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 414 482 IPR009071 -
Sto6g3132 493 SMART hmgende2 413 483 IPR009071 -
Sto6g3132 493 SMART hmgende2 172 242 IPR009071 -
Sto6g3132 493 SMART hmgende2 288 356 IPR009071 -
Sto6g3132 493 Coils Coil 337 407 - -
Sto6g3132 493 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 173 241 IPR009071 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Sto6g3132 HMG_box 4.5e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3132 K09273 - gmx:100783033 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3132 6 38124215 38126447 Sto6g3132 6 38124215 38126447 ECH