Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3120 ATGAGAAAGAAAGTTAATGGTGTAGGGGACGCGTGGCAAGAGAACATGGAGGGAATGCAAGACCGAGAGTCACACCTTGAGCTTCAAAACGACGCCGATATCAGGTCGTCTCTATCAAATCTGATACTATCAGGTGGCACCACAAACACCCTCGATTCCATTTTCTCCCATTGCCCACCCACCACTAGCACTAGCAACCCCATGTTTGAGCCCTTGGGCTCTTACGGCTTCGAGCCTCTGGGCTCATCCGTCTACCTCCGTCAAAGAGATATCCTCCAGAAGTTCTACGAAGACAACCGCGTCGCAACTCCTACTACGTCGTCGTTTCGTGGCTTCCCCTTTAACAATTCCTCTTTAGGCTTCACGTGTCTCACCGCACCCTCCTCCTCCTCGAAGAAAAAGCTATACAGAGGAGTGAGGCAGAGACATTGGGGAAAATGGGTGGCGGAAATCAGACTTCCTCAGAACAGAATGCGAGTGTGGCTGGGGACTTACGAAACCGCCGAAGCCGCGGCTTATGCGTATGATCGTGCGGCTTATAAGCTCCGAGGCGAATACGCGCGTTTGAATTTTCCCAATCTCAAGGACCCTACCAAGTTAGGTTTCGGAGACTGCTCCAGATTGAACGCTCTCAAGACCTCCGTCGATGCCAAAATTCAAGCTATATGTCAGAAGGTGAAGAGGGAGAGAGCCAACAAGATTGCTGCTAAGAAGCGTAATCCCACTCCTTCtcataatatttctctttcgaACGACGCTCACTCTGACAAATCACACAAGCTTgaatcctcttcttcttcttcgtcttcctTACCCCCCTTGTCGCCGTTGATTTTTGATGATTCGTGGACGAACGACTGGATTTCACCCAGCGTTTCGGAGGATGGGATATGGAAGCTGGATAACTCGCCGCCCTCTGTTTCGATGGTAACAGAGGAATCGGGTTGTTCCTTGGCGAGGATGCCTTCCTACGACGCTGACTTAATCTGGGAAGTGCTTGCCAATTAA 1008 0.4851 MRKKVNGVGDAWQENMEGMQDRESHLELQNDADIRSSLSNLILSGGTTNTLDSIFSHCPPTTSTSNPMFEPLGSYGFEPLGSSVYLRQRDILQKFYEDNRVATPTTSSFRGFPFNNSSLGFTCLTAPSSSSKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDCSRLNALKTSVDAKIQAICQKVKRERANKIAAKKRNPTPSHNISLSNDAHSDKSHKLESSSSSSSSLPPLSPLIFDDSWTNDWISPSVSEDGIWKLDNSPPSVSMVTEESGCSLARMPSYDADLIWEVLAN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3120 335 MobiDBLite consensus disorder prediction 1 24 - -
Sto6g3120 335 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Sto6g3120 335 PRINTS Ethylene responsive element binding protein signature 158 174 IPR001471 GO:0003700|GO:0006355
Sto6g3120 335 Gene3D AP2/ERF domain 135 193 IPR036955 GO:0003700|GO:0006355
Sto6g3120 335 SUPERFAMILY DNA-binding domain 135 192 IPR016177 GO:0003677
Sto6g3120 335 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 29 335 - -
Sto6g3120 335 Pfam AP2 domain 136 185 IPR001471 GO:0003700|GO:0006355
Sto6g3120 335 MobiDBLite consensus disorder prediction 233 272 - -
Sto6g3120 335 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 29 335 - -
Sto6g3120 335 ProSiteProfiles AP2/ERF domain profile. 135 192 IPR001471 GO:0003700|GO:0006355
Sto6g3120 335 CDD AP2 134 194 IPR001471 GO:0003700|GO:0006355
Sto6g3120 335 SMART rav1_2 135 198 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3120 Sto-Chr6 38070614 38073305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3120 32 335 AP2-EREBP Transcription Factor Family AT1G64380 46.154 1.91e-65 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto6g3120 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3120 - - lja:Lj0g3v0046879.1 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3120 6 38070614 38073305 Sto6g3120 6 38070614 38073305 ECH