LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto6g3108	ATGAGGCATAATGTGGCCGCCATAGCTACGTATATCATCAAGCAAAGTTTGACTCCGGGAACAGGGGAAGGAAGTTATCGACCCAGTTTTCGACAACCAACCTCTCAAGCTCAAGCTCAATTATGCCAAACCACATCCTGTGGTCAACTATCTATCGACTTCCCTTTCCAGTTGGTGCAATCTAATAACCAATCGGCTCGTTGTGGCTACCCCGGGTTCGAACTCTCCTGCACCAACCACACCCAAGCTCTTCTCTCTCTCCCATCCTGGAGCGACGTGGTTGTGACCAGCATCTCCCTCGAGAACCAGCAGGTGTGGATCAACGACCCCAATGGCTGCCTCCCTAAACGCTTCATAGACACCAACTTCAGTCTCCAAGGCTCGCCTTTCCAATTAGGCGACTACTATAACTTACTCAATTATTCCTTCTATAATTGCCCTTCTAATCTCACCACGTCTACTATGCTGGGCCTGGACCCCATAAGCTGCCTCAGCTCTAGTAACGACGTTAATAACTCCGTGATTGCCGTGTTGTCTGATCCTCCCTTCTCCATCCCCTGGATCTCCTCGTGCCGTTTCGTTGACTATGCTTTCGTTCCCGTTCCGTTTACTGATCGCGTTTTCTGGAGAAGCTTCGATACTGATATTATGTTACAGTGGGACCAACCTGATTGTGGAGATTGTGTGGCACGTGGAGGGCGATGTGGATTTTCCTCCGACACTTCTGCTCGTTCCATTGGATGTTACGATCTTCCAACCCAAGCTCAAGGAGAAGGATCCGGAGGTCTGTCGAAGAAAGCCAAATACGGCGTGGCATTTGGGGTGGGAATACCTGGATTGGTTGGTGTGATGGTGCTTGCATGTATCTTCTGGGGTAGAATGAAGACGCAGCATCTTCAACGCCGACAATTATTAGCTGCCCACACAGAATTTTCAACCTCAATAATCCCACATCGTACGGTGCTAGTGATGGGGCTTGATGGGGCAATCATAGAGAAATATCCGAAGACGCAGTTAGAGCCGCCTTTCTACTTGAGAGGAACCAAGGAACCCAATTGTGGCCTCCCAGGTTTCGAGCTTTTCTGCAACGAAAAAAACCAAACAATTCTCAGCCTCCCAAAAGGAGGAGACTTGCTGGTCAAAGGAATCTCCCCGGAGCAGCAAAAGCTGTGGGTGAACGATCCACAGGATTGCCTCCTCGCACGCTTCGTGCATGGCGACATAGACTTCGAAGAGTCACCTTTCCATTGGAGCAGCATTTACCTCGATCCTTTTGACCTTAACTTCCTCAACTGCACCACCAACAACCTGACGGACTCCTTCCCGCTAATCACGCACAAAATACCTTGCCTGGTTGGCCGCGGCGGAGTTAACCACTCGGTGGTGGCGGTTTGGAGGGATCCCTATACGAAGGCGCCGCCGCCCACGGACCCCACTTGCTGGTTGATTTCCACCACTTCGGTTCCTGTGAGTGTGAATACATCGAAACCATTTGAAGAATTCTGGACCAACTTTTACTCTGATCTCGAGTTAGAATGGGGCAATCATCCTCCTGGATGCGGAGATTGTGATCCCTTCTGTAAATCCTTTAAGGGTTGGGATATTTGCGggaGAAATACTCCAAGGAATGGGAAGTTGGGCGAGCTTCTAGGACTGGGCGTAGCAGGAATGGTATTCTTCGTAGTGGTTGGGATCACACAATTTTTGGGCGTGCCCCCCAGCGCTTATGGTAGGGCCGGATCAAGAGGAGATCAAATAGATAATGGAAACACAGAATTAACAAACATGGGTGGGAATCATCATCATGATGTGATTGACGTGAGAATGGGGGCGCGGGAAGGACTAGATGGGAAAACCATCGAAGAATTCTATCCAAAAGTGCAGGTTAGTGAAAGTGGAAGATTACCCAAGGTGGGTGATAATGTTTGCTCCATTTGTCTCTGCGAGTATGAGCCTATGGATACTTTGCGAACCATTCCTCTCTGTGACCACTATTTTCATGCACACTGCATAGATGGGTGGCTCAAGATGAACGCCACCTGCCCCTTGTGccgaaattaa	2061	0.4925	MRHNVAAIATYIIKQSLTPGTGEGSYRPSFRQPTSQAQAQLCQTTSCGQLSIDFPFQLVQSNNQSARCGYPGFELSCTNHTQALLSLPSWSDVVVTSISLENQQVWINDPNGCLPKRFIDTNFSLQGSPFQLGDYYNLLNYSFYNCPSNLTTSTMLGLDPISCLSSSNDVNNSVIAVLSDPPFSIPWISSCRFVDYAFVPVPFTDRVFWRSFDTDIMLQWDQPDCGDCVARGGRCGFSSDTSARSIGCYDLPTQAQGEGSGGLSKKAKYGVAFGVGIPGLVGVMVLACIFWGRMKTQHLQRRQLLAAHTEFSTSIIPHRTVLVMGLDGAIIEKYPKTQLEPPFYLRGTKEPNCGLPGFELFCNEKNQTILSLPKGGDLLVKGISPEQQKLWVNDPQDCLLARFVHGDIDFEESPFHWSSIYLDPFDLNFLNCTTNNLTDSFPLITHKIPCLVGRGGVNHSVVAVWRDPYTKAPPPTDPTCWLISTTSVPVSVNTSKPFEEFWTNFYSDLELEWGNHPPGCGDCDPFCKSFKGWDICGRNTPRNGKLGELLGLGVAGMVFFVVVGITQFLGVPPSAYGRAGSRGDQIDNGNTELTNMGGNHHHDVIDVRMGAREGLDGKTIEEFYPKVQVSESGRLPKVGDNVCSICLCEYEPMDTLRTIPLCDHYFHAHCIDGWLKMNATCPLCRN	686

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto6g3108	686	ProSiteProfiles	Zinc finger RING-type profile.	643	685	IPR001841	-
	Sto6g3108	686	Pfam	Ring finger domain	642	685	IPR001841	-
	Sto6g3108	686	PANTHER	RING-H2 FINGER PROTEIN ATL20-LIKE	342	686	-	-
	Sto6g3108	686	PANTHER	RING-H2 FINGER PROTEIN ATL20-LIKE	37	339	-	-
	Sto6g3108	686	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	37	339	-	-
	Sto6g3108	686	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	342	686	-	-
	Sto6g3108	686	SMART	ring_2	643	684	IPR001841	-
	Sto6g3108	686	Pfam	Wall-associated receptor kinase galacturonan-binding	340	394	IPR025287	GO:0030247
	Sto6g3108	686	Pfam	Wall-associated receptor kinase galacturonan-binding	42	109	IPR025287	GO:0030247
	Sto6g3108	686	Pfam	Wall-associated receptor kinase C-terminal	210	249	IPR032872	-
	Sto6g3108	686	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	601	686	IPR013083	-
	Sto6g3108	686	SUPERFAMILY	RING/U-box	638	685	-	-
	Sto6g3108	686	CDD	RING-H2_PA-TM-RING	642	685	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto6g3108	Sto-Chr6	37988125	37995577	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto6g3108	342	686	C3H Transcription Factor Family	AT2G46495	32.565	2.84e-34	132