Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3107 ATGCCTACCTTCTTATTCTCAatattcctcctcctccttcctcAAACCCAATCATGCAAAACAACATACTGCGGAAACCCCGAGGTGGGACCCCCCATTCAGCACCCTTTCTACTTGAGAGGAACCAACGAAACCAATTGTGGCCTCTCAGGTTTCGAGCTTTTCTGCAACGAGAAAAGCCAGACAATGCTCACTCTCCCAAAAGGAGGAGACTTACTCGTCAAAGCAATCTCCCTGGAGCAGCGAAAGCTGTGGGTGAACGATCCACAGGATTGCCTCCTCGCACGCTTCGTGCATGACTTGGATTTCCAAGATTCACTTTTCCAATGGACCAGCATTTACCTCGATCCGCAAATCCTTAACTTCCTCAACTGCTCCACCAACAACTTGACGGACTCCTTCCCGCTAATCACGCACAAAATACCTTGCCTGAgcgccaccgccgccgccgacGGGAACAACCACTCGGTGGTGGCGGTTTTGACGCAGCCCTATAAGGAGGCGCCGACGGACCCGAGTTGCTTGTTCATTTCCACCACTTTGGTTCCAGTGAGTTTGAATAGATCGAAACCAGATGATGAATTCTGGTCCAACTTTTACTCTGATCTGGAGTTAGAATGGGACAATCCTCCTGACTGCGGAGATTGTGATCCCCTCTGTGAATCCTTTAAGGGTTGGGATGCTTGCGTTAACTTAAATAATAATCTTCCAATAAACCCAGggAGAAGTGCTCCAAGGAATGTGAAATTGGGCGAGCTTCTAGCTAGATTGGGCGTAGCTGCAGGAATGGTATTATTTGTAGTGGTTGGGTGCACACAATTTATGAGGGTTAAGGTGGGCCCGAATGCTTTCGGTAGGGCCGGATCAAGAGGAGAAGAAAGAGATGGAAACACAGAATTAACGAACATGGGTGTGAATGTGATTGACGTGAGAATGGGGGCTCGGGAAGGATTAGATGGGAAAACCATCGAAGAATTCTATCCAAAAATGCAGGTTAGTGAAAGTGGAGGATTACCCAAGGTGGGTGATAATGTTTGCTCCATTTGTCTGTGTGAGTATGAGCCCATGGATACTTTAAGAACCATTCCTCTCTGTGACCACTATTTTCATGCACACTGCATAGATGGCTGGCTCAAGATGAATGCCACGTGCCCCTTGTGccgaaattaa 1170 0.453 MPTFLFSIFLLLLPQTQSCKTTYCGNPEVGPPIQHPFYLRGTNETNCGLSGFELFCNEKSQTMLTLPKGGDLLVKAISLEQRKLWVNDPQDCLLARFVHDLDFQDSLFQWTSIYLDPQILNFLNCSTNNLTDSFPLITHKIPCLSATAAADGNNHSVVAVLTQPYKEAPTDPSCLFISTTLVPVSLNRSKPDDEFWSNFYSDLELEWDNPPDCGDCDPLCESFKGWDACVNLNNNLPINPGRSAPRNVKLGELLARLGVAAGMVLFVVVGCTQFMRVKVGPNAFGRAGSRGEERDGNTELTNMGVNVIDVRMGAREGLDGKTIEEFYPKMQVSESGGLPKVGDNVCSICLCEYEPMDTLRTIPLCDHYFHAHCIDGWLKMNATCPLCRN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3107 389 SMART ring_2 346 387 IPR001841 -
Sto6g3107 389 CDD RING-H2_PA-TM-RING 345 388 - -
Sto6g3107 389 Pfam Ring finger domain 345 388 IPR001841 -
Sto6g3107 389 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 389 - -
Sto6g3107 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 389 IPR013083 -
Sto6g3107 389 SUPERFAMILY RING/U-box 341 388 - -
Sto6g3107 389 ProSiteProfiles Zinc finger RING-type profile. 346 388 IPR001841 -
Sto6g3107 389 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 4 389 - -
Sto6g3107 389 Pfam Wall-associated receptor kinase galacturonan-binding 19 88 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3107 Sto-Chr6 37983455 37985422 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3107 17 389 C3H Transcription Factor Family AT2G46495 30.053 9.16e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3107 - - lja:Lj4g3v3004070.1 242.662