Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3106 ATGGCTATGGCTTCTTTACCATTATTATTGTTGGTCTTACTCTTCCTTATTCTTCCTCACAAAACAACGAGCTTTCAATTCTGCGAAACCACTTTTTGCGACACACACGGCGGACCTTCCATTCAATTCCCTTTCCAGTTAAGAAAAAGCAACGAAAGCAAGCGTTGCGGATACCCAGGCTTCCAACTTTCCTGCAACGAAAATTCCCAAACTATTCTCATTCTCCCACGCGCTGGAGAATTCGTCGTCAATCAAATCTCCCTGGAAGATCAAAAGCTCTGGATCAACGATCCCAATAATTGCCTGGCTAAACGATTCATGGATAATAAAAGCTTCAGCCTCACGGGTTCCCCTTTTAAACTCAGTGAGGAATCCAATTATAGTGTCGTGAGTTTGGATTTTCTGAATTGTCCCTCCAGCGTCGTTGATTCATTGCCTATAACGCCCATCACTTGTTTGAGCAGTACTAACTATTCTAATTCGGTGGTAGCGATGGTGGCGGATCCTCAATATTCAACGCCGTGGGTTAGTTTGTGCGAGTTTATTTCATCGGCTTTGGTTCCTTTGGCTGATACCCAAAGTTGGTTATTCTGGAACAACCTTAATGATGATATTGAGTTGCAATGGGACAGTCCTCGGTGTGGGGGTTGCGTTGAGAGGAAAGGACAGTGTGGATTCTTGGAAGATACGGGTCTTGAACTCGCTTGCTATTTGCCAGAGCAAGGGAAAGGCGTTTCAAAGAGAGTGATCATAGGAGTAGCTTTGGGAGTGGGAGTACCAGGAATCGTTTGTATAGCAGGATTTGTGTGGTTCCTTAGTGGTAAAGAAAGCAGGAACGAATCGGAAGAAAGGGAAGGGAGGGTGGAAGCAAGTGTGGTACAAGTGCGTGTAGTAACGGCAGGACTTGACCGAGAAAGCATTGAGAAATATCCGAAAATGGAGTTGATGATGAGTGAAAATGGAGGCCTAGGAATAGGATTGCCAAATCCCGATGACAATACTTGCTCCATTTGTCTGTGCGAGTACCAACCCAAGGACACCTTAAGGATTATACCACAATGCAATCACTATTTTCATTCCAATTGTATAGAGGGGTGGCTCAAGTTGAATGCCACCTGCCCCTTGTGTCGAAATTTTCCTCTTAAGTAA 1149 0.4456 MAMASLPLLLLVLLFLILPHKTTSFQFCETTFCDTHGGPSIQFPFQLRKSNESKRCGYPGFQLSCNENSQTILILPRAGEFVVNQISLEDQKLWINDPNNCLAKRFMDNKSFSLTGSPFKLSEESNYSVVSLDFLNCPSSVVDSLPITPITCLSSTNYSNSVVAMVADPQYSTPWVSLCEFISSALVPLADTQSWLFWNNLNDDIELQWDSPRCGGCVERKGQCGFLEDTGLELACYLPEQGKGVSKRVIIGVALGVGVPGIVCIAGFVWFLSGKESRNESEEREGRVEASVVQVRVVTAGLDRESIEKYPKMELMMSENGGLGIGLPNPDDNTCSICLCEYQPKDTLRIIPQCNHYFHSNCIEGWLKLNATCPLCRNFPLK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3106 382 SUPERFAMILY RING/U-box 329 378 - -
Sto6g3106 382 ProSiteProfiles Zinc finger RING-type profile. 335 377 IPR001841 -
Sto6g3106 382 Pfam Wall-associated receptor kinase C-terminal 157 240 IPR032872 -
Sto6g3106 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 380 IPR013083 -
Sto6g3106 382 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 8 380 - -
Sto6g3106 382 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247
Sto6g3106 382 CDD RING-H2_PA-TM-RING 334 377 - -
Sto6g3106 382 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 380 - -
Sto6g3106 382 Pfam Ring finger domain 333 377 IPR001841 -
Sto6g3106 382 SMART ring_2 335 376 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3106 Sto-Chr6 37980788 37983014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3106 26 380 C3H Transcription Factor Family AT2G46495 33.699 3.15e-51 173