Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3095 ATGGAAGCGGATTTCGTCACCAATGGGATGGTCATAGATGATGCTTCTATGGCCGATGACAATGCGATTAATGTAAACTCCACGGTATCTTTCCCTTTAGGATTTTCATATTTGCTTACTCTTGAACTAGGAAGCAAGGGCACTTCGAAAGATTTAGTTATTGAAGGGGACAGATGTGGAATTTGCATGGATGTTGTTATTGATAGAGGAGTTCTGGATTGCTGTCAGCACTGGTTTTGTTTTGCATGCATTGACAACTGGGCTAGCATCACGAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTGATTACATGTGTTCCAGTGTTTGATACCATTGGAAGCAATAAAGTTGAAGATGATTCATTTTCCAGAGATGATGACTGGTCCATTGAAGGGAAGAATAACACTCTGTCATTTCCCTCATACTATATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAAATTCGAAGTGGATCAGCGACTACTGAAGGAGATTCGGGTCTTGATACATCAATTGCTTGTGATTCATGTGACATATGGTATCATGCTTTTTGTGTGGGATTTGATACCGAAGGTACATCTGACATTACTTGGTTATGCCCAAGGCGTTGTTTTAGATGTGTGCCAGATGAAGTTACTGAAAGAATGGATGCCAGTTCATTGGAGAGGACAACCATGGAATTTAACAAAGAGAATGGTAACAATGAATGTCAAGCTGAGGAGTCTTTCTCAGGAAAAGTGTCTGTGTCTGTTGCTGATACTGGAGAGACAGCTGTAGTTGTCTCTTTGGTTGAAGGAAATCAATATCCTCCAGCATCAAGTGGGAAGGGTTTGTCACCCCTTGAAGTTAACAAGAATCCAATAAGTGAATCTTGTGTTTCCATATCCAGCACCAATAGTCATCAAAGTAAGACAGAGAAGACTACTGCTTCATCAATGGAGGAACAGGAGCTGGAGCTTTCCTTATCACACAATGTATTCTGTAGCTTACCATCTAACTCCTTAGGACCTGATGATTTGGAAAAAAGTTCTTTTGAAGAAAGGAGTGAACCAAGTAGCTCCAGTGGAACCAAGATATTGAATGAATCATACGACAGAACTAGTCCATCTAGAAATGAATCTGATATGGGTCTTCATCTGGTTGATGACATTGACAAGAATGCAACAAAAGATCAAGAAACTGATATCCGTCAGTTAAGTTCAGAAGAACTTATTTTGGAAGGAGATGAAATTGAACCCAACGCTCATAAGGACAATGCTAGAGTTCTAGGCAGAAAGAGAAAGCACGTTGATTACagTAATGATCAGGTTCATGTAGAAATTGATGATAGAGATGCCAAACCTGAACCTGCAGTTGAAGAGTTGCAAAAGAAACCTAGAGCTGATGGCAGTCAACTGATTAATCACAAGGACTCAGCAGATCCTCCACTGTCAGATACTAAGAAGAACTGTTCTTTTGAAGCTGTTTCCAGAGATGAGGATTTAAAACGTCATCTAACAAAGAAGAATGCCTCATCAGATATAATGAGTATTGTTAAAGGCACGAACCGAAAGCCCTCGAAGGGACTATCTGGCACTAAATCTTGTAACAAGTCATCtaaaaacaatgaaaatatGGCAGGGTTGAGGGTGAAAAAGATCATGAAGAGAGCTCCTGATCGTGGTGAATCATCCTTGGTAGTTGAAAATCTAAGGGAGGAAATCAGAGAAGCTGTCCGTAACAATTCCTCTAAAAATTTTGGAGAAAACCTTTTTGATACAAAGCTTCTTGCAGCATTCAGGGCTGCTATAGCAGGGCCTAAAACTGAACCTGTAAATAAGCTGACCCCTGTAGCTTTGAAGGCAAAGAAGTCAATGTTGCAGAAAGGGAAAGTTCGTGAACATCTAACAAAGAAGATTTTTGCGACTTCAAATGGAAGAAGAAAGCGTGCATGGGACAGGGACTGTGAAATTGAGTTTTGGAAGTATCGTTGCATGAGAGAACCAAAGCCTGAAAAGATTGAAACTTTGAAGTCAGTTCTTAATCTCCTGAGAGGGAGTTCACAGGGCCCAGAATCAAATGAGGCTCCTGAATGTCAGTCCAAGAATCCTATTCTTTCTAGGTTGTATTTAGCAGATACATCTGTTTTCCCACGAAAAGATGATGTCAAGCCACTTTCCTCCCTTAAAACTGCTGCTGACTTAGAGCAGAATAAACAACATAATCCATCAGCAAAAGCATCAAATCAGTCGCTTGGTAATAGTACTATTAAAGCAACAGAGATAAATAATGTTTTACCAAAGGCTGGAGCCTGCTCATctgaaaataaagtaaataagaaGATTGTGAATGGCTCAATTGGTGGTAATTCAACTTCTGGTAAAGTACATTTAAGCAGACACTCGGAAGGGACATCAGTTTCTTCTTCTGGTGGTTCCAAGGTTGACAAAAAGGAGACGGGCGTTAAATCAGACTGTATAAAGAGTGACAAAAGAAAATGGGCCATGGAGGTTCTTGCAAGAAAAACAGCCGCCACTGGCAAGAAAACATCAAATGAAAATCAGGAAGACAATgcaatccttaaaggaaattaTCCTTTGCTAGCGCAGTTACCAGCTGATATGAGACCAGTATTGGCACCCAGTCACCACAATAAAATTCCAATATCAGTAAGGCAGACACAACTTTACCGCCTAACTGAGCACTTCTTGAGGAATGCAAATCTGTCAGTCGTTCGCAGAACTGCAGATACAGAATTGGCTGTTGCAGAtgctattaatattgaaaaagagGTTGCTGACAGATCAAACAGCAAGCTAGTGTATATGAATCTTTGTTCACAAGAGCTCTTGCATCGCTCAAATAAAAAATCCAATGTAGCAACGGATACAAGTCCTCAGGTCTCATCAGCAGCCCTTGCGGATAGATCAGAGCAAAATACTGATGATGGATCTGAGCAAAATACTGATGATCCTTCAACTGACACTGCTGTTGAAATAGCCCTGAAAAATGCTGGTCTTTTGTCTGACTCACCTCCTTGTAGTCCACACGAGAAGAGTGAAATATCCATTAAAGAAGATGATCTGTCAGGGCCTGATAATATCCTTGAACTGGATTCTCACCCGGAGATGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGATTACATTGGTGCAAGTGCTGCCAAAGTCTTAAACtcacaagaagaagaaagtgagaccaaattgaaactcaTTTTCTCTACCATGAACTTGAAAAATTCAGAAACTGCTTTGGATTGTGCGGACAGTGAGAGGTTAGAAAACAATGGAGTGTCACAAGATGCCTCCTGCTCCTCAAATCAATATGATGCAGGCAACAAGGACTCCACAATTGATTCAGAGATTGGCAAGTCTTCAGTTTCTTCGGAGGGCCTTTTCAGTGAGGGTGCGGTTGAGCCAGTTGATACTGAATTCGAAGAATTATATGGTCCAGATAAAGAACCACTTGCATTAAAATTTCCAGATGTGAAGTTAAGAACATTGCATGGAGAGGACAAGACAGAAACTTTTACCGAGGGCAGTGACAGTCACAAAAAAGAACAAATACCAGACCAAGCTGTAAATGCATCTGAATCTAGGAATGACAATCTTGCAAGGAATGCGGTTGAAAATTGTCGGAAGAAGGGAGAGAAATGTGACACCACTGCTGAGCAGTCTGACTCGGCAATTCATGTAACGAAGAAGGTAGAAGCTTACATAAAGGAACATATCAGGCCACTATTCAAGAGTGGTGTGATCACAGCTGAACAGTACAGGTGGGCTGTCACAAAAACAACTGAGAAGGTTATGAAGTACCATTCCAAAGCCAAAAATGCCAATTTCCTCATAAAGGAAGGTGAGAAAGTGAAGAAACTTGCAGAGCAGAGGTGCATTGAAACTGATGTGTTCAGACTTAAGAACTGCAAGTTGTTGATACTTGAAAGTACTCCCTTTACGTTTTTGATCAAGCTTCGCTTGGAAGTGCTAAATGGGCTTAGCTTGGAGTTTGATGCAAAAGGCCATGCTGTTCAAAGCAATTGA 4065 0.398 MEADFVTNGMVIDDASMADDNAINVNSTVSFPLGFSYLLTLELGSKGTSKDLVIEGDRCGICMDVVIDRGVLDCCQHWFCFACIDNWASITNLCPLCQNEFQLITCVPVFDTIGSNKVEDDSFSRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKIRSGSATTEGDSGLDTSIACDSCDIWYHAFCVGFDTEGTSDITWLCPRRCFRCVPDEVTERMDASSLERTTMEFNKENGNNECQAEESFSGKVSVSVADTGETAVVVSLVEGNQYPPASSGKGLSPLEVNKNPISESCVSISSTNSHQSKTEKTTASSMEEQELELSLSHNVFCSLPSNSLGPDDLEKSSFEERSEPSSSSGTKILNESYDRTSPSRNESDMGLHLVDDIDKNATKDQETDIRQLSSEELILEGDEIEPNAHKDNARVLGRKRKHVDYSNDQVHVEIDDRDAKPEPAVEELQKKPRADGSQLINHKDSADPPLSDTKKNCSFEAVSRDEDLKRHLTKKNASSDIMSIVKGTNRKPSKGLSGTKSCNKSSKNNENMAGLRVKKIMKRAPDRGESSLVVENLREEIREAVRNNSSKNFGENLFDTKLLAAFRAAIAGPKTEPVNKLTPVALKAKKSMLQKGKVREHLTKKIFATSNGRRKRAWDRDCEIEFWKYRCMREPKPEKIETLKSVLNLLRGSSQGPESNEAPECQSKNPILSRLYLADTSVFPRKDDVKPLSSLKTAADLEQNKQHNPSAKASNQSLGNSTIKATEINNVLPKAGACSSENKVNKKIVNGSIGGNSTSGKVHLSRHSEGTSVSSSGGSKVDKKETGVKSDCIKSDKRKWAMEVLARKTAATGKKTSNENQEDNAILKGNYPLLAQLPADMRPVLAPSHHNKIPISVRQTQLYRLTEHFLRNANLSVVRRTADTELAVADAINIEKEVADRSNSKLVYMNLCSQELLHRSNKKSNVATDTSPQVSSAALADRSEQNTDDGSEQNTDDPSTDTAVEIALKNAGLLSDSPPCSPHEKSEISIKEDDLSGPDNILELDSHPEMDIYGDFEYDLEDEDYIGASAAKVLNSQEEESETKLKLIFSTMNLKNSETALDCADSERLENNGVSQDASCSSNQYDAGNKDSTIDSEIGKSSVSSEGLFSEGAVEPVDTEFEELYGPDKEPLALKFPDVKLRTLHGEDKTETFTEGSDSHKKEQIPDQAVNASESRNDNLARNAVENCRKKGEKCDTTAEQSDSAIHVTKKVEAYIKEHIRPLFKSGVITAEQYRWAVTKTTEKVMKYHSKAKNANFLIKEGEKVKKLAEQRCIETDVFRLKNCKLLILESTPFTFLIKLRLEVLNGLSLEFDAKGHAVQSN 1354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3095 1354 MobiDBLite consensus disorder prediction 447 486 - -
Sto6g3095 1354 MobiDBLite consensus disorder prediction 297 323 - -
Sto6g3095 1354 SMART ring_2 59 97 IPR001841 -
Sto6g3095 1354 ProSiteProfiles Zinc finger RING-type profile. 59 98 IPR001841 -
Sto6g3095 1354 MobiDBLite consensus disorder prediction 953 976 - -
Sto6g3095 1354 Pfam Ring finger domain 58 98 IPR001841 -
Sto6g3095 1354 MobiDBLite consensus disorder prediction 515 547 - -
Sto6g3095 1354 PANTHER RING FINGER PROTEIN 41, 151 129 1303 - -
Sto6g3095 1354 MobiDBLite consensus disorder prediction 354 379 - -
Sto6g3095 1354 SUPERFAMILY FYVE/PHD zinc finger 174 213 IPR011011 -
Sto6g3095 1354 MobiDBLite consensus disorder prediction 338 383 - -
Sto6g3095 1354 MobiDBLite consensus disorder prediction 447 472 - -
Sto6g3095 1354 MobiDBLite consensus disorder prediction 953 992 - -
Sto6g3095 1354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 210 IPR013083 -
Sto6g3095 1354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 122 IPR013083 -
Sto6g3095 1354 PANTHER RING/U-BOX PROTEIN 129 1303 - -
Sto6g3095 1354 MobiDBLite consensus disorder prediction 1180 1199 - -
Sto6g3095 1354 MobiDBLite consensus disorder prediction 515 544 - -
Sto6g3095 1354 MobiDBLite consensus disorder prediction 1004 1029 - -
Sto6g3095 1354 ProSitePatterns Zinc finger RING-type signature. 75 84 IPR017907 -
Sto6g3095 1354 MobiDBLite consensus disorder prediction 1105 1126 - -
Sto6g3095 1354 SUPERFAMILY RING/U-box 50 104 - -
Sto6g3095 1354 MobiDBLite consensus disorder prediction 782 813 - -
Sto6g3095 1354 MobiDBLite consensus disorder prediction 1180 1206 - -
Sto6g3095 1354 MobiDBLite consensus disorder prediction 297 312 - -
Sto6g3095 1354 MobiDBLite consensus disorder prediction 782 818 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3095 54 101 C3H Transcription Factor Family AT2G39100 37.255 2.95e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3095 6 37908015 37918431 Sto6g3095 6 37908015 37918431 ECH