Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3087 atgtTGCTTGATTTGCTTCGTCCCGTGGACCCCGCAAAAGACTTGCCACGTGGAAGTTCACAAGACCTTATGCTGACGTgtatggaggaggaggaTTTTAAGCTCACACCCACAACCGTTACTCCCGCCGTCCGGTTAACTCACACTCTTGTTAAAATCCTAACCACGGAGAAAAGGGGACCGAGAGAGAAATTGCAACCTTCTCTAGCTCAGGATAATAACAATAATGATGGTGGTTTTGTAACCGTCCTTCACTGCTTCTGCTTTGCCTTACGTTTCTGCTGGAGTGGAGATCGTTACGGTTACGGACTGTGTGTAAAGCGTGCTTGTGGACTTGAGAAGTCGCTTGAGGTGTTTGAATCTCTATTGCTGACGTGGGAATTGAACGACGACGTTGAATCGCGGTGGGTCTTTCGGGCTTTCTCGATGTCTTCGGCTGAAGGTGGTTGTGGAGGAGATGATCTGTATGAGGAACTGTGGAAGGTTTGTGCGGGACCTCTTGTCGACGTTCCTCGGGTCGGCGAGAGGGTGTTTTATTTTCCGCAAGGACACATGGAGCAATTGGAGGCATCAACAaatcaagaactaaataataggaTTCCGGTCTTCAACCTTCCCTCCAAGATCCTTTGTCGGGTGTTGAACATCCATCTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAAATTACTCTCGTGCCAGAATCAGATCAAACTGAGCCTACAAGACCAGATCCATGTCCTGCTGAACATCCAAGGCCAACAGTGCACTCATTCTGCAAGATCTTAACGGCATCTGATACAAGCACTCATGGTGGATTCTCTGTTCTTAGGAAACACGCCACTGAATGCCTTCCTCCTTTGGACATGTCCCAGTCAACTCCAACTCAGGAATTGGTTGCCAAAGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTCAGAGGTCAGCCACGTAGGCACTTGCTCACAACTGGATGGAGTACTTTTGTTACTTCCAAGAGATTAGTTGCTGGAGATACCTTTGTATTTTTAAGAGGGGTCAATGGTGAATTACGCGTTGGAGTGAGGCGTCTTGCTCGTCAGCAGAGTAGCATGCCGTCTTCTGTGATTTCCAGTCAGAGTATGCACCTAGGAGTTCTTGCAACTGCTTCTCATGCTGTTGCAACTCAAACCCTTTTTGTAGTATATTATAAGCCAAGGACAAGCCAGTTCATCATAAGCGTGAACAAGTACTTGGAGGCTATCAACAATAAGTTTACTGTTGGTATGAGGTTCAAGATGAGGTTTGAAGGGGATGAGTCTCCTGAAATTGACAAAAGATTTTCGGGAACTATAATTGGAGCAGAAGATATTTCTCCTCACTGGGTAAATTCAAATTGGCGATCACTCAAGGTTCAATGGGATGAACCTGCAGCTGTTCCCAGACCTGATAGGGTTTCACCATGGGAAGTAGAGCCCTTTGTTGCTTCTGCTACTGCCTCTTCAGTTCAACCTGCTGTTGTAAAGACTAAGAGACCTCGACCATCCAGTGAAGTTCCAGATCTTGACACAACTTCCACTGCCTCTGCTTTCTGGAATTCTGAGCTGATGCAACCTGATATGTCACAACTTGGAGTGATGGCTGAGAGTAGAAGGAGTGACAATTCAAGCATTTGGTATCATAGTCAAAATGATAAGACTAGTAAAAACAACAGCAACACTCTGTCAAGGAATCAAACAGAAGGGAGTTGGCTAACTTCTCCCCATTCCAGTGGTCCTCCACATTTGTTGCAGGACACAACTGATGATGGCCAGAACGTCTCTGCTTGGCCTGTCCACTCAGTTCATCCAACGTCTAACACATCAAGATTGAACAATGATCATGTTCCTGACCAAGCTGGCAAGGAGAATAAAGCTGAAACTGCAACAAGATGTCGATTGTTTGGAATTGAGCTTATTGGTCATTCCGGCAACCCACCTACTATGGAGAAGGTACCTACACATGCAGTAGGTGTTCCCAATAGCACTTCTGAAATTCGTTTAAGTACCTTGTCTGGAACTGATTCAGACCGCAGGTCTGATATCTCAAAGGCTTCCCAAGAGGGGAAACAAGAACAGCTTCAAGTATCACTAAAGGAGACTCAGAGCAAGCAAATATGTTCCAGAAGCCGCACAAAGGTCCAAATGCAGGGGGTCGCAGTGGGTCGTGCAGTGGACTTGACCATGTTGGATGGGTATGATCAACTTATAGATGAGTTGGAGGAGATGTTTGACATAAAGGGACAACTTCGATTTAGGAAGAAGTGGGAAATTGTCTTCACTGACGATGAAGGGGATATGATGCTTGTGGGTGATGATCCGTGGCCTGAATTCTGCAACATGGTCAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAAGATGAGTACAGGAAGCAGACTGCCCATTTCATCGATAGAAGGTGAAGAGACTGTAATAAGCGGGGACACAGCTGAAAACTGA 2493 0.4513 MLLDLLRPVDPAKDLPRGSSQDLMLTCMEEEDFKLTPTTVTPAVRLTHTLVKILTTEKRGPREKLQPSLAQDNNNNDGGFVTVLHCFCFALRFCWSGDRYGYGLCVKRACGLEKSLEVFESLLLTWELNDDVESRWVFRAFSMSSAEGGCGGDDLYEELWKVCAGPLVDVPRVGERVFYFPQGHMEQLEASTNQELNNRIPVFNLPSKILCRVLNIHLLAEQETDEVYAQITLVPESDQTEPTRPDPCPAEHPRPTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGVNGELRVGVRRLARQQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKYLEAINNKFTVGMRFKMRFEGDESPEIDKRFSGTIIGAEDISPHWVNSNWRSLKVQWDEPAAVPRPDRVSPWEVEPFVASATASSVQPAVVKTKRPRPSSEVPDLDTTSTASAFWNSELMQPDMSQLGVMAESRRSDNSSIWYHSQNDKTSKNNSNTLSRNQTEGSWLTSPHSSGPPHLLQDTTDDGQNVSAWPVHSVHPTSNTSRLNNDHVPDQAGKENKAETATRCRLFGIELIGHSGNPPTMEKVPTHAVGVPNSTSEIRLSTLSGTDSDRRSDISKASQEGKQEQLQVSLKETQSKQICSRSRTKVQMQGVAVGRAVDLTMLDGYDQLIDELEEMFDIKGQLRFRKKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSTGSRLPISSIEGEETVISGDTAEN 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3087 830 SUPERFAMILY DNA-binding pseudobarrel domain 251 389 IPR015300 -
Sto6g3087 830 Gene3D - 714 806 - -
Sto6g3087 830 Pfam B3 DNA binding domain 260 360 IPR003340 GO:0003677
Sto6g3087 830 MobiDBLite consensus disorder prediction 666 706 - -
Sto6g3087 830 MobiDBLite consensus disorder prediction 681 695 - -
Sto6g3087 830 Pfam Auxin response factor 386 467 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto6g3087 830 CDD B3_DNA 258 360 IPR003340 GO:0003677
Sto6g3087 830 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 150 817 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto6g3087 830 SMART B3_2 260 362 IPR003340 GO:0003677
Sto6g3087 830 MobiDBLite consensus disorder prediction 498 520 - -
Sto6g3087 830 MobiDBLite consensus disorder prediction 666 680 - -
Sto6g3087 830 ProSiteProfiles PB1 domain profile. 718 799 IPR000270 GO:0005515
Sto6g3087 830 MobiDBLite consensus disorder prediction 555 624 - -
Sto6g3087 830 MobiDBLite consensus disorder prediction 555 636 - -
Sto6g3087 830 ProSiteProfiles B3 DNA-binding domain profile. 260 362 IPR003340 GO:0003677
Sto6g3087 830 PANTHER AUXIN RESPONSE FACTOR 9 150 817 - -
Sto6g3087 830 Gene3D - 421 496 - -
Sto6g3087 830 Pfam AUX/IAA family 765 802 IPR033389 -
Sto6g3087 830 Pfam AUX/IAA family 640 754 IPR033389 -
Sto6g3087 830 Gene3D - 257 361 IPR015300 -
Sto6g3087 830 SUPERFAMILY CAD & PB1 domains 719 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3087 Sto-Chr6 37850281 37855532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3087 151 811 B3 DNA Binding Superfamily AT4G23980 59.789 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto6g3087 AUX_IAA 1.5e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3087 K14486 - gmx:100803911 1064.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3087 6 37850281 37855532 Sto6g3087 6 37850281 37855532 ECH