Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3049 ATGCAAGATATGAAGCAGCAGCAAGGAAATGAAGATTCTAAGAAGAAGGAGCGTCATATAGTCTCTTGGACTCAAGAGGAGGATGATATACTCAGAGAGCAGATTAGCATCCATGGAACAGAAAATTGGACGATTATTGCATCTAAGTTCAAGGATAAAACGACAAGACAGTGCAGGAGAAGATGGTACACATACTTGAATTCTGATTTTAAGAAAGGAGGGTGGTCACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAGATTTTTGGCAACAGATGGACTGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAACGCCGTGAAAAACCGCTTCTCCACACTGTGCAAAAAGAGAGCGAAATACGAAGCCTTGGCGAAAGAGAACAGCACATCATACATCAATTCAAATAACAAAAGGATTTCTTTCCAACAATATGCTTATAGTACAGATGCAACATCAGAAGCTGCAGCATCAATCAAGAAGATGAGGGCCCACATCCCTGATGCTGCAGAAAAGATCAACTTTGGAGACAGATCACATAAACAATGTGGAACACAGATCAGTCAGCAAACAAGAGCACCATTTGCAGTATTAGCTCAAAATTTCCATAATAACAACTTGCAAGATCAGCATCATGTTTGCAATGCCAAGTTCAGCAGTTATGCTCAGAATAACAAAACTCAGGGAAGGTTCCTCAAAAAGGATGATCCAAAGATAAGTGTGTTGATGCAGCAAGCAGAATTACTAAGTTCACTAGCAATGAAGGTTAATACAGAGAACGTGGACCAGAGCCTTGAGAATGCATGGAAGGTTCTTCAAGAGTTTCTGAACCGAACCAAAGAATCAGATCTTCCCAAATATAAGATCCCAGATTTACAGCTCGTAGATCTTAAAAATTTGGTGGAGGACTTAACGAGTGACAACGAGGGAAGCCCACCCTGTTGGAGGCAACCAGAGCTAAATGAAGACTCTCCAGGAAGTTCTGAATACAGTACAGGATCCACTCTCATGCCCCACTCAGCTGGTGACAATTCAGAACATTCGCTGCATCAGGATGTTGGAACTGAAAGGAAGTCTATTGAAATTGGAGATAGAAAAGGAATAAGTTGTTGTGACAAAAGGTTTCTTTCTGCTTCAACGATGGATCAAACAGATATCTTGCCATCTTGTGGGGAAGAGCTAAACAATGATGCCATTGCTTCTGCCTTATCAAGTACAGAGTTCAGTTCCCCTATTCAGGTTACCCCTATCTTCAGATCCTTGGCTGCAGGCATTCCCAGCCCACAGTTTTCAGAAAGTGAAAGGAGCTTCCTTATGAAAACCCTCGGAATGGAATCCCCATCCCTGAACCTAAGTGCCAAAGCCTCACAACCACCACCCTGCAAAAGAGCACTACTACAAAGTCTATAA 1416 0.423 MQDMKQQQGNEDSKKKERHIVSWTQEEDDILREQISIHGTENWTIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENSTSYINSNNKRISFQQYAYSTDATSEAAASIKKMRAHIPDAAEKINFGDRSHKQCGTQISQQTRAPFAVLAQNFHNNNLQDQHHVCNAKFSSYAQNNKTQGRFLKKDDPKISVLMQQAELLSSLAMKVNTENVDQSLENAWKVLQEFLNRTKESDLPKYKIPDLQLVDLKNLVEDLTSDNEGSPPCWRQPELNEDSPGSSEYSTGSTLMPHSAGDNSEHSLHQDVGTERKSIEIGDRKGISCCDKRFLSASTMDQTDILPSCGEELNNDAIASALSSTEFSSPIQVTPIFRSLAAGIPSPQFSESERSFLMKTLGMESPSLNLSAKASQPPPCKRALLQSL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3049 471 CDD SANT 22 66 IPR001005 -
Sto6g3049 471 Gene3D - 11 71 - -
Sto6g3049 471 SUPERFAMILY Homeodomain-like 20 113 IPR009057 -
Sto6g3049 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 121 IPR017930 -
Sto6g3049 471 SMART sant 19 68 IPR001005 -
Sto6g3049 471 SMART sant 71 119 IPR001005 -
Sto6g3049 471 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Sto6g3049 471 CDD SANT 75 116 IPR001005 -
Sto6g3049 471 PANTHER MYB PROTEIN-RELATED 9 468 - -
Sto6g3049 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 70 IPR017930 -
Sto6g3049 471 Pfam Myb-like DNA-binding domain 23 83 - -
Sto6g3049 471 MobiDBLite consensus disorder prediction 307 357 - -
Sto6g3049 471 Gene3D - 74 146 - -
Sto6g3049 471 PANTHER TRANSCRIPTION FACTOR MYB88 9 468 - -
Sto6g3049 471 MobiDBLite consensus disorder prediction 323 346 - -
Sto6g3049 471 ProSiteProfiles Myb-like domain profile. 22 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3049 Sto-Chr6 37578307 37583292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3049 61 471 MYB Transcription Factor Family AT1G14350 54.087 7.74e-135 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto6g3049 Myb_DNA-bind_6 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3049 K09422 - gmx:100807667 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3049 6 37578307 37583292 Sto6g3049 6 37578307 37583292 ECH