Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3047 ATGAATATGGAAGATCATTTCAGGGACTTGGCAGTGGCTATTCAGCAGAGAGCAGCAGTAGAATGTAGATGGACGACATATAAATATTGGTGGGAAGAGGACAAACCAGACACCTGCACCtctgCATGGAAATCAGCTCTTGAAGATATTTGTGTTGTGATATTATATGAGATGGCTTTCTTCCCTGCAAATTTCATGCTTCAAACCCCTCATCCAGAagaccatcatcatcatcaacctcCTCCTTCTCTGAACTCACTCCTACCGTCATGTGCTCCTCAAGATTATCATCATGGGGGAgcttcttttttaggtaagagATGCATGTCATTTTCAGGAATTGAACTAGGTGAAGAAGCTAATGCTGAGGAAGACTTGTCTGATGATGGGTCTCAGGCaggggagaagaagagaaggctTAACATGGAACAAGTGAAGACACTTGAGAAAAGCTTTGAGCTTGGAAATAAGCTTGAACCAGAGAGGAAAATGCAGCTAGCTAGGGCTCTTGGGTTGCAGCCTAGACAGATTGCTATATGGTTCCAAAACAGAAGGGCTAGGTGGAAAACCAAGCAGCTTGAGAAAGACTATGATCTTCTTAAAAGACAATATGAAGCTCTCAAGGCAGATAATGATGCTCTTCAAGCTCAGAACCAAAAACTCCAGGCAGAGATATTGGCACTGAAAAGCAGAGAGCCAACTGAATCCATCAACCTCAATAAAGAAACAGAGGGATCTTGCAGCAATAGAAGTGAGAACAGCTCAGAGATTAAGTTTGATATCACAAGAACACCAGCAGCTATTGATAGTCCTGATCTATCCACTCAACAAACCAGCATAACCCTCTTTCcatcttcttctgcttctgttAGGCCTTCTTCAGGAGGAGGAGGAGTGACTCAGCTCTTGCAAGCTTCTTCAAGGCCTGACCTTCAGTGCCAGAAGGTTGATCAGATGGCCAAAGATGAGAGCTTGAGCACTATGTTCTGTGGGATCGATGATCAATCTGGGTTCTGGCCATGGTTGGAGCAGCAGCATTTCAATTGA 1047 0.404 MNMEDHFRDLAVAIQQRAAVECRWTTYKYWWEEDKPDTCTSAWKSALEDICVVILYEMAFFPANFMLQTPHPEDHHHHQPPPSLNSLLPSCAPQDYHHGGASFLGKRCMSFSGIELGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEALKADNDALQAQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSEIKFDITRTPAAIDSPDLSTQQTSITLFPSSSASVRPSSGGGGVTQLLQASSRPDLQCQKVDQMAKDESLSTMFCGIDDQSGFWPWLEQQHFN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3047 348 Coils Coil 183 231 - -
Sto6g3047 348 CDD homeodomain 136 192 IPR001356 GO:0003677
Sto6g3047 348 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 56 348 IPR045224 GO:0003700
Sto6g3047 348 Pfam Homeodomain 136 189 IPR001356 GO:0003677
Sto6g3047 348 MobiDBLite consensus disorder prediction 120 139 - -
Sto6g3047 348 MobiDBLite consensus disorder prediction 239 255 - -
Sto6g3047 348 SUPERFAMILY Homeodomain-like 129 193 IPR009057 -
Sto6g3047 348 PRINTS Lambda-repressor HTH signature 162 171 IPR000047 GO:0003677
Sto6g3047 348 PRINTS Lambda-repressor HTH signature 171 187 IPR000047 GO:0003677
Sto6g3047 348 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 56 348 - -
Sto6g3047 348 SMART HOX_1 134 195 IPR001356 GO:0003677
Sto6g3047 348 Pfam Homeobox associated leucine zipper 191 231 IPR003106 GO:0006355|GO:0043565
Sto6g3047 348 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981|GO:0006355
Sto6g3047 348 MobiDBLite consensus disorder prediction 236 255 - -
Sto6g3047 348 Gene3D - 128 197 - -
Sto6g3047 348 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3047 Sto-Chr6 37553194 37556317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3047 58 348 Homeobox Transcription Factor Family AT1G69780 61.794 5.89e-114 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto6g3047 Homeodomain 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3047 K09338 - gmx:100801479 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3047 6 37553194 37556317 Sto6g3047 6 37553194 37556317 ECH