Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3027 ATGGACTTTCGTGCGAATACTCCTACCCGACCCGCCAATGCCTCCCTCACGcgccgccgccaccaccacTCGCCGCCGCTGCTTTACAAGGAATGCCTCAAGAACCACGCCGCCAGCATCGGCGGCCACGCCCTTGACGGCTGCGGCGAGTTCATGCCCTCCCCCGCCTCCTCCCCCACCGACCCCCGCTCGCTAAAATGCGCCGCCTGCGGTTGCCACCGGAACTTCCACCGCCGCGACCCACGGGAACACCCCAACTTCCTCAGCTGCTTCTACTCCTCCGGGCCAGCTCCCCGAGGCCCAAGCCCAACCCCCAGCCCAAGAAGCCCAAGCCCAATGTCATCAAGCCCATCGCCGCCTCCGCTCTCGCATTTCCCGCCTTCATCTTACATGGTGTTGTCGCTGGGGCCGTCGGATGAGAATAATCggacggcggcggcggcgaaGGAGAATGGGAAGAAGAGGTGTAGGAGTAAGTTCACGGAGGAGCAGAAGGAGAGGATGCGTTTGTTTTCGGAGAAACTGGGGTGGAAAATGCAAAAAGGAGAAAATGATGGGTTGGTTGAGGAATTCTGTGAAGAGATTGGGGTTTCGAGAAGGGTTTTCAAGTGCATATACGCCATCGATTGCTTctctcctctacctctgccacCGATTACGAATCTAGGAACCACCGGCTTTCAACTATCCAAGGCCTTTTCTCGGACCTTCCAAGCCGATTTGAACATCTGTGCATACACCGATGACTTGCACGTTGCCGGCGAATCGTACGCTCCTCTTACACGCGTCAACGTCATTGTAGCCGTCAATGAGGCTGACATCGTAGTAGTCTTGCGAGGCTCCGCCAAAGTCGAGAGTGAACTCCGCGAGCGTGGCCGGTGGCATGGCTCCTATGCCGCCACAGTCGATGCCGACAGAGCTACAGTCATCGGTGGCACAGTTACCCTGGCCTAA 954 0.5409 MDFRANTPTRPANASLTRRRHHHSPPLLYKECLKNHAASIGGHALDGCGEFMPSPASSPTDPRSLKCAACGCHRNFHRRDPREHPNFLSCFYSSGPAPRGPSPTPSPRSPSPMSSSPSPPPLSHFPPSSYMVLSLGPSDENNRTAAAAKENGKKRCRSKFTEEQKERMRLFSEKLGWKMQKGENDGLVEEFCEEIGVSRRVFKCIYAIDCFSPLPLPPITNLGTTGFQLSKAFSRTFQADLNICAYTDDLHVAGESYAPLTRVNVIVAVNEADIVVVLRGSAKVESELRERGRWHGSYAATVDADRATVIGGTVTLA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3027 317 Gene3D - 137 206 - -
Sto6g3027 317 MobiDBLite consensus disorder prediction 98 126 - -
Sto6g3027 317 MobiDBLite consensus disorder prediction 96 159 - -
Sto6g3027 317 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 29 80 IPR006456 -
Sto6g3027 317 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Sto6g3027 317 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 29 80 IPR006456 -
Sto6g3027 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 18 204 - -
Sto6g3027 317 MobiDBLite consensus disorder prediction 1 23 - -
Sto6g3027 317 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 153 203 IPR006455 -
Sto6g3027 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 18 204 - -
Sto6g3027 317 SUPERFAMILY Homeodomain-like 144 203 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3027 Sto-Chr6 37321961 37324724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3027 27 214 ZF-HD Transcription Factor Family AT1G69600 50.510 9.22e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sto6g3027 ZF-HD_dimer 4.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3027 - - vra:106766949 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3027 6 37321961 37324724 Sto6g3027 6 37321961 37324724 ECH