Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3024 ATGAGCGATCATTTGGTGCTGTATGTCGATCGTCTCGTACGCCCTGTGCCTGTTGAGTCGGTGACGGAGCCGGCCCAGTTGGTTCCCGACTTGTCTCAGGCTGGGAAGTCTGTGGATGTGCCGGGCCCCTCCGGTTCTGCACCGCCGGCGGACGATGACGCTAGGTCGGAGCACGATGAGGGTGGTGGTGAGGATGAGCCGCTGGTCCCGAGCGCGGAGTGTCGTATTTGTCAGGAGGAAGACACTATTAACAATTTAGAAACGCCTTGCGCCTGCAGCGGCAGTCTGAAGTATGCTCATCGAAAGTGCGTGCAGCATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATCTGTCATAAGCCTTATCAGCCTGGTTATATTGCCCCACCTCCTCGTCCTCATGCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGTGCACCTTTGGACTTGCGTGATCCACGACTCTTGGCAATTGCAGAGGCTGAACGACAATTCTTGGAAGCTGAATATGATGAGTATGCTGCTTCTAGTGCCAGTGGAGCTGCCTTTTGCCGTTCCGCTGCTTTAATTCTAATGGCCCTTCTACTCTTGCGGCATGCACTTTCTGTCACAGATgctgatggtgatgatgatccGTCAACCTTTTTTTCCATCTTCTTACTTCGAGCAGCTGGATTTCTCTTACCTTGCTATATTATGGCTTGGGCAATCAGCATCTTGCAACGTCGGCGACAAAGACAGCAGGAAGCTGCAGCTCTGGCTGCAACTCAAGTTGCTTTTGTACTGCAATCTGGACAGCGTCAGGGTCTGCAATTCGCGATAGCACCGGGACCCACAGTGAATGCACACCCGGAACATATTGTTTAG 885 0.5085 MSDHLVLYVDRLVRPVPVESVTEPAQLVPDLSQAGKSVDVPGPSGSAPPADDDARSEHDEGGGEDEPLVPSAECRICQEEDTINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHKPYQPGYIAPPPRPHAEETTIDIGGGWTISGAPLDLRDPRLLAIAEAERQFLEAEYDEYAASSASGAAFCRSAALILMALLLLRHALSVTDADGDDDPSTFFSIFLLRAAGFLLPCYIMAWAISILQRRRQRQQEAAALAATQVAFVLQSGQRQGLQFAIAPGPTVNAHPEHIV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3024 294 CDD RING_CH-C4HC3_MARCH 74 120 - -
Sto6g3024 294 Coils Coil 162 182 - -
Sto6g3024 294 SUPERFAMILY RING/U-box 72 124 - -
Sto6g3024 294 SMART ringv_2 73 120 IPR011016 GO:0008270
Sto6g3024 294 MobiDBLite consensus disorder prediction 51 65 - -
Sto6g3024 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 128 IPR013083 -
Sto6g3024 294 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 280 - -
Sto6g3024 294 ProSiteProfiles Zinc finger RING-CH-type profile. 66 126 IPR011016 GO:0008270
Sto6g3024 294 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 280 IPR033275 -
Sto6g3024 294 Pfam RING-variant domain 74 119 IPR011016 GO:0008270
Sto6g3024 294 MobiDBLite consensus disorder prediction 24 70 - -
Sto6g3024 294 Pfam Protein of unknown function (DUF3675) 125 243 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3024 Sto-Chr6 37302218 37305134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3024 70 149 C3H Transcription Factor Family AT2G37950 32.609 1.43e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3024 - - ahf:112734090 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3024 6 37302218 37305134 Sto6g3024 6 37302218 37305134 ECH