Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3012 ATGTCGTCGGAAGTTAAGGACCCGGAGATAAAGCTGTTTGGGACGACGATTTCCTTCCCACTCCACCCTACGCTCTCCTCCAATGACTCTTCTTCTGCAACTACTACGGATAAGgaaCCATCAAGGAAAGAACTCACCTCAGAACAAGATGACGATGCTTCACATCAAACCATGGAGGATTCTAAATCTCCCACATCTTCAGTTCATGAGAACCCCAAGACACCTTGTCCCTCAGCTGAAAGAGAAACTTCTTTACTGAAACCGTCTAAAGATGGAGAGCAGAGTGAGTCAAGTGCACCGCAAGAAAAAGTTCTTAAGAAACCTGACAAGATACTTCCATGCCCTCGATGCAATAGCATGGACACCAAATTCTGCTATTTTAACAATTACAACGTCAATCAGCCCCGCCATTTCTGTAAGAACTGCCAGAGGTACTGGACTGCAGGAGGAACCATGAGAAATGTGCCTGTGGGGGCTGGTCGCCGCAAAAACAAAAGCTCTTGTTCCTCTCATTATCGGCATGTAATGGTTCCTGAATCCCTTCTTATGGCTAAAGCCAATGCAGCCAATGGATTGCATAACCCTTGTTTGGAAAATGGAGCAACTGTCTTAACTTTTGGCTCAGATTCTCCGATATGTAATTCCATGGCTTCTGTATTGAACCTTACAGAAAAAACACAAAATGGTGTTCTTAATGGACATGTACCTGAGCAGAATATTATTGTTTCTTATGGTAGAGAAGATAATAGGGATGATCACTCAACTTCAACTTCATCAGAGAAGAGGGGTTCACAAGAATCAGTGGATAAAAGTTGTGAAGCTTCTCCTCCTCAATTGCAATGCGTCCCAGGTTCCCAGTGGAATTATCCATGGAATTCAATGCAGTGGAATACTCCCATGCCTCCTCCTGTGTTCTGTCCGCCCAGTTATCCAGTGCCCTTCTTTCCCACCCCTACATATTGGGGCTGTACTCTACCACCCTCGTGGAATATACCTTGCATTTCTCCGCAATATTCTGTGAACCACTCTTCCCCTAGTTCTGGCTCCAACTCACCTACCTTGGGAAAACACTCAAGGGATGGGAGCATGCTAACCCCAGCAAACTCTCAGAAAGACAAGTCTGATATAGAGAATAAGAACTCAGAAAATGGTGTCTTGATTCCCAAGACTCTGAGAATTGATGATCCCACTGAGGCTGCAAAGAGTTCTATATGGTCAACACTAGGGATCAAGAATGAAAAGGCCAATTCCCTCAATGAAGGAGGGGGCCTTTTCAAGGCATTCCCATCCAAGGGAGATGACAAGAATCATCATCACATGGTTGAGGCATCGCCGGTGCTGCAAGCCAACCCGGCAGCTTTGTCGCGGTCTCTTACCTTCCATGAGCAGCAGACATAA 1398 0.4549 MSSEVKDPEIKLFGTTISFPLHPTLSSNDSSSATTTDKEPSRKELTSEQDDDASHQTMEDSKSPTSSVHENPKTPCPSAERETSLLKPSKDGEQSESSAPQEKVLKKPDKILPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSCSSHYRHVMVPESLLMAKANAANGLHNPCLENGATVLTFGSDSPICNSMASVLNLTEKTQNGVLNGHVPEQNIIVSYGREDNRDDHSTSTSSEKRGSQESVDKSCEASPPQLQCVPGSQWNYPWNSMQWNTPMPPPVFCPPSYPVPFFPTPTYWGCTLPPSWNIPCISPQYSVNHSSPSSGSNSPTLGKHSRDGSMLTPANSQKDKSDIENKNSENGVLIPKTLRIDDPTEAAKSSIWSTLGIKNEKANSLNEGGGLFKAFPSKGDDKNHHHMVEASPVLQANPAALSRSLTFHEQQT 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3012 465 MobiDBLite consensus disorder prediction 340 389 - -
Sto6g3012 465 MobiDBLite consensus disorder prediction 19 35 - -
Sto6g3012 465 MobiDBLite consensus disorder prediction 243 279 - -
Sto6g3012 465 MobiDBLite consensus disorder prediction 244 268 - -
Sto6g3012 465 MobiDBLite consensus disorder prediction 1 105 - -
Sto6g3012 465 MobiDBLite consensus disorder prediction 36 58 - -
Sto6g3012 465 ProSitePatterns Zinc finger Dof-type signature. 114 150 IPR003851 GO:0003677|GO:0006355
Sto6g3012 465 MobiDBLite consensus disorder prediction 59 73 - -
Sto6g3012 465 MobiDBLite consensus disorder prediction 340 371 - -
Sto6g3012 465 Pfam Dof domain, zinc finger 109 166 IPR003851 GO:0003677|GO:0006355
Sto6g3012 465 ProSiteProfiles Zinc finger Dof-type profile. 112 166 IPR003851 GO:0003677|GO:0006355
Sto6g3012 465 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 463 - -
Sto6g3012 465 PANTHER CYCLIC DOF FACTOR 2 1 463 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3012 Sto-Chr6 37228473 37231053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3012 1 463 C2C2-Dof Transcription Factor Family AT3G47500 42.596 3.88e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto6g3012 zf-Dof 4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3012 - - zju:107429011 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3012 6 37228473 37231053 Sto3g1560 3 11555816 11556812 CCT
Sto6g3012 6 37228473 37231053 Sto6g3012 6 37228473 37231053 ECH
Sto6g3012 6 37228473 37231053 Sto3g1560 3 11555816 11556812 ECH
Sto6g3012 6 37228473 37231053 Sto12g0910 12 5640707 5643275 ECH
Sto6g3012 6 37228473 37231053 Sto8g2802 8 20315196 20317580 ECH
Sto6g3012 6 37228473 37231053 Sto13g1769 13 25136405 25139584 ECH