Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3011 ATGGATCGGAATCGGACAAGAATTAGGGCTGGATTAGGATCACGATATGTAAGCGTATTGTGTATGGTTCGTAAGAGTCCAAAGGGCACAAGAAGTGAAAGGGCCAATGGGGATTTGTTGATTGGGCTCCCGATTCTCCCGCTTCTCTCGATGACCGATTTTGCCGCTCACCCCATCTATGTAAGCTCACTTACCGTTTTCTACACTCTTTTCATTCATTCCCCTAATTCCCAACTCTCTACCCCTTCGTTCTTCATCATTCGCGGGATGGGCCGGGTGAAGCTTAAGATAAAGAGGCTGGAGAATACCAATGGCCGTCAGGCGACTTTTGCTAAAAGGAAGCATGGAATTCTTAAAAAGGCTACTGAGTTATCGATACTGTGCGATATAGATATCATACTGCTCATGTTCTCACCCACTGGCAAGCCTTCTCTGTGCAGAGGAAGGCGTAGTAACATAGAGGAGGTTATAGCGAAGTTTGCACAATTAACTCCGCAGGAAAGGGCAAAAAGGAAGTTGGAGGGTCTTGAAGCACTGAAGAAAACATTTAGGAAGTTAGACCATGATGTAAATATACAAGAATTTCTGGGTACAAGTAGTCAAACTATTGAGGATCTAAGGAATCAAACGATGTTATTACAATCTCAAATATCTGTAATGCGTGAAAGATTAAGCCATTGGTCTGAGCCTGATAAAATAAATAGTGTGGAACAATTGGGACAAATGGAAAGTTCACTCAGGGAGTCAATTGATCGTATTCGAACACGTAAGGAAAATATACAAAAGCAGCAAATTGTTAAATTGCAATGCACTAACCAGTTCAATGAGATGCAGATTCCCTACAGAATGAGTGCTGAGCAACATCTTCAATCTTTATCATGGATTACCAACAGTGACACTCAACATATAGTCTTACCAGAGGACTCAGGCTTGCTTCTCCACAAAGACCTAGAGTGCTCTGCTAGCTCTTCTTTTGGGAGTTTTGCTAGTTATGTTGGCTCAAGTATGAAAACAGAGATGTCTAATTCTGGACAAGAAAACGGTGTGCTCAGTGAATTGAGCAGTACAGCTCCGATGAGATTACAAGCAAGTGAGCAGTTTCCATATGGCCTGCCATACAATTTCAATTTATTGAATGACACAAAGTTCCAACCAGGTATGGAAATGAGCCCACCTGAAAACCCCATAGACTATCATGTTAATGGAAACTTTGAAGCTCCTAGACCTGGGTATGACAATAACCACCATGGATGGACTTCCACATCAGGGTCTAGTGCTGTTAATTTGTTCGATGAGCATTTGTACGCCCAGGCAAGTCCCCCTCAAGTGCACTTTAGCTTTTCATAA 1347 0.4239 MDRNRTRIRAGLGSRYVSVLCMVRKSPKGTRSERANGDLLIGLPILPLLSMTDFAAHPIYVSSLTVFYTLFIHSPNSQLSTPSFFIIRGMGRVKLKIKRLENTNGRQATFAKRKHGILKKATELSILCDIDIILLMFSPTGKPSLCRGRRSNIEEVIAKFAQLTPQERAKRKLEGLEALKKTFRKLDHDVNIQEFLGTSSQTIEDLRNQTMLLQSQISVMRERLSHWSEPDKINSVEQLGQMESSLRESIDRIRTRKENIQKQQIVKLQCTNQFNEMQIPYRMSAEQHLQSLSWITNSDTQHIVLPEDSGLLLHKDLECSASSSFGSFASYVGSSMKTEMSNSGQENGVLSELSSTAPMRLQASEQFPYGLPYNFNLLNDTKFQPGMEMSPPENPIDYHVNGNFEAPRPGYDNNHHGWTSTSGSSAVNLFDEHLYAQASPPQVHFSFS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3011 448 PRINTS MADS domain signature 92 112 IPR002100 GO:0003677|GO:0046983
Sto6g3011 448 PRINTS MADS domain signature 112 127 IPR002100 GO:0003677|GO:0046983
Sto6g3011 448 PRINTS MADS domain signature 127 148 IPR002100 GO:0003677|GO:0046983
Sto6g3011 448 ProSiteProfiles MADS-box domain profile. 90 142 IPR002100 GO:0003677|GO:0046983
Sto6g3011 448 SUPERFAMILY SRF-like 91 182 IPR036879 GO:0003677|GO:0046983
Sto6g3011 448 Coils Coil 166 186 - -
Sto6g3011 448 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 99 143 IPR002100 GO:0003677|GO:0046983
Sto6g3011 448 Gene3D - 103 185 IPR036879 GO:0003677|GO:0046983
Sto6g3011 448 Coils Coil 243 263 - -
Sto6g3011 448 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 90 438 - -
Sto6g3011 448 SMART madsneu2 90 149 IPR002100 GO:0003677|GO:0046983
Sto6g3011 448 Coils Coil 203 223 - -
Sto6g3011 448 CDD MADS 91 143 - -
Sto6g3011 448 PANTHER SERUM RESPONSE FACTOR HOMOLOG 90 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3011 Sto-Chr6 37209654 37213543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3011 90 441 Type I MADS-box Gene Family AT2G03060 49.738 6.59e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto6g3011 SRF-TF 5.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3011 - - lang:109356063 530.791