Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3010 ATGGCTCTCATGGGTTTGCTGCTAGTGGGTTTTCTCACAATGTTCTCTTCAGCTTATGGCTATGGCGGGGGGTGGATTAATGCTCATGCTACCTTCTATGGAGGGAGTGACGCATCAGGGACAATGGGAGGGGCTTGTGGGTATGGGAATCTTTACAGTCAAGGTTATGGAACCAACACTGCTGCTCTGAGCACAGCTCTATTCAACAATGGCTTGAGCTGTGGTTCTTGCTATGAGATTAAGTGTGCCAATGATGGCAAATGGTGCCTCCCTGGCTCCATTCTGGTCACAGCCACCAATTTCTGCCCTCCAAACAATGCCTTGCCCAACAATGCAGGAGGATGGTGTAACCCTCCTCTTCACCACTTTGACCTCTCTCAGCCTGTCTTCCTCCGCATTGCTCAATACAGAGCTGGAATTGTCCCTGTGGCTTACAGAAGGTGA 444 0.5023 MALMGLLLVGFLTMFSSAYGYGGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCANDGKWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFLRIAQYRAGIVPVAYRR 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3010 147 SUPERFAMILY Barwin-like endoglucanases 11 147 IPR036908 -
Sto6g3010 147 Gene3D - 12 147 IPR036908 -
Sto6g3010 147 PANTHER EXPANSIN 6 147 - -
Sto6g3010 147 Pfam Lytic transglycolase 60 145 IPR009009 -
Sto6g3010 147 SMART dpbb_1 60 145 IPR007112 -
Sto6g3010 147 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Sto6g3010 147 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Sto6g3010 147 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Sto6g3010 147 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Sto6g3010 147 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Sto6g3010 147 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Sto6g3010 147 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Sto6g3010 147 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Sto6g3010 147 PRINTS Expansin/Lol pI family signature 138 147 IPR007118 GO:0005576
Sto6g3010 147 PANTHER EXPANSIN-A15 6 147 IPR002963 GO:0009664
Sto6g3010 147 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3010 Sto-Chr6 37205516 37206079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3010 1 147 Expansin Gene Family AT2G03090 82.313 4.46e-90 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3010 - - gmx:100527059 288.115