Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3001 ATGGTAGAAGCAACAAAGATGATGGAAGAAGAGACAAAGCTACACATAGGAATCTCCGAAGAAGAGTCTATGCAACAGCTCAGATCCAAAGCAACGGAACTTCTCCTAAGAGAAGAATGGAAGGATTCCATCGAAGCCTATTCAAACTTCATCACTCTCTGCAAAAAGCAAATCTTTCACACCCATTTACACTCCGATAATCAGCTTCAAAAGCTTCGAAAATCCCTCTGCTTAGCTTTCTCGAACAGAGCCGAAGCAAGATCGAGACTGCGAGAGTTTCAATCAGCTCTGGAAGATTGCGATTCCGCTTTGGAAATCGATGGTACCCATTTGAAGACCCTGATCTGTAAAGGTAAGATCTTGCTCAATCTCAATGTATATTCAATGGCTCTGGATTGCTTCAGGCTCGCTCTTTTGGATCCCCAAGCTAATGGGAACTCTGAAAACCTCAATGGGTATGTGGAGAAATGTAAAAAACTCGACTTTCTCTCAAGAACTGGAGCTCTGGATCTATCCGACTGGGTTTCAAATGGGTTTCGAGGGAAGTGTCCAGAACTTGCAGAATTCGTTGGTTCTTGTGTGCAGATAAAGAGATCTGAGATTAGTGGTCGTGGCTTGTTTGCTACTAAGAACATCGATGCAGGAACCTTGGTTTTGGTCACAAAGGCAATAGCGATGGAGAGGAGTATACTGGGGGGAAAAGATTTGAGTGAGGAAGCTCAATTGGTGATGTGGAAGAACTTCATTGATAAAGTTTCAGACTTTATCAGAAAATGTCACAGAACAGGCAATTTGATCAGCAAATTGTCGAGTGGGGAAGATGAGGAAATGCTTGAGGTTCCTGATATAGCTTTGTTCAAGCCAGAAACAGGGGAGAACAAGAACAAGAAATCTAGTGATAGTGAGAATGAGAAGGTTGATATGGGGAAGTTACTATCTATATTAGATGTGAATTCTCTAACTGAGGATGCAGTTTCAGCCAATGTATTGGGGAACAAGAGCAATGACTTCTATGGTGTAGGACTATGGCTCCTACCTTCCTTCATCAACCATTCATGCTGCCCCAATTCAAGGAGATTGCATGTGGGTGACTATCTGATACTTCATGCTTCCAAAGATATCAAAGCAGGTGAAGAGATTACCTTTGCCTATTTTGATCCACTTTCTCCATTGCACAAGCGCAAGGAAATGTCAATGACATGGGGGATCCAATGCAGATGCAAGAGATGCAAGTTTGAGTCAGAAATGTTAAGTAAACAAGAGATGAAAGAGATTGAGATTGGTATTGAGAGAGGGATGGATGTGGGTGGTGCAGTGTATAAACTAGAAGAAGAGATGAAGAGATGGAAGGTGAGGGGGAAAGAGAAAGGCTATGTGAGGGCATCATTTTGGGCTGCATATTCAGAGGTTTATAGGTCAGATAGATGCATGAAGAGGTGGGGAAGGAGGATTCCAGCAATGGAAGCTGTGGTTTATAGCATCATTGAAGTAATGGGAGGAGATGAGAGGCTGCTTAAGATAGTGATggaggagatgaagaagaatggAGGTGGACTTGTGGAGATGGAGAAAGCTTTGAAGCTGGCAAGGGATGTGTATGGGAAAGTGGTGAAGAAGCAGGCAATGAGGGCTCTTCTTGAGCTTTGTGTTGCAACTAATGATTGA 1665 0.424 MVEATKMMEEETKLHIGISEEESMQQLRSKATELLLREEWKDSIEAYSNFITLCKKQIFHTHLHSDNQLQKLRKSLCLAFSNRAEARSRLREFQSALEDCDSALEIDGTHLKTLICKGKILLNLNVYSMALDCFRLALLDPQANGNSENLNGYVEKCKKLDFLSRTGALDLSDWVSNGFRGKCPELAEFVGSCVQIKRSEISGRGLFATKNIDAGTLVLVTKAIAMERSILGGKDLSEEAQLVMWKNFIDKVSDFIRKCHRTGNLISKLSSGEDEEMLEVPDIALFKPETGENKNKKSSDSENEKVDMGKLLSILDVNSLTEDAVSANVLGNKSNDFYGVGLWLLPSFINHSCCPNSRRLHVGDYLILHASKDIKAGEEITFAYFDPLSPLHKRKEMSMTWGIQCRCKRCKFESEMLSKQEMKEIEIGIERGMDVGGAVYKLEEEMKRWKVRGKEKGYVRASFWAAYSEVYRSDRCMKRWGRRIPAMEAVVYSIIEVMGGDERLLKIVMEEMKKNGGGLVEMEKALKLARDVYGKVVKKQAMRALLELCVATND 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3001 554 SUPERFAMILY SET domain 193 411 IPR046341 -
Sto6g3001 554 Gene3D Tetratricopeptide repeat domain 20 161 IPR011990 GO:0005515
Sto6g3001 554 Pfam SET domain 203 384 IPR001214 GO:0005515
Sto6g3001 554 SMART set_7 192 391 IPR001214 GO:0005515
Sto6g3001 554 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 20 543 - -
Sto6g3001 554 SUPERFAMILY TPR-like 25 139 IPR011990 GO:0005515
Sto6g3001 554 Gene3D SET domain 293 415 IPR046341 -
Sto6g3001 554 SMART tpr_5 77 110 IPR019734 GO:0005515
Sto6g3001 554 SMART tpr_5 111 143 IPR019734 GO:0005515
Sto6g3001 554 SMART tpr_5 24 57 IPR019734 GO:0005515
Sto6g3001 554 ProSiteProfiles SET domain profile. 192 385 IPR001214 GO:0005515
Sto6g3001 554 CDD SET_SMYD 334 410 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sto6g3001 SET 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3001 - - mtr:MTR_4g082140 771.926