Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2991 ATGGAACAAAAGTTTGATGCTGTCAATGATATCAATCGATCGCGGAGTAACTGGACTATCAAAATTCGCATCACAAGGCTATGGGAAAGTCCTCCTTATCCTAAAACATGCCCAGACAACACAATCGATATGGTTCTTTGTGACAAGGATGGTTCCAAAATTGCTGCTTCCGTGAAGAGTGTATTCGCAAATAAATTCAAGAATAATCTCAAGGAAGGTGCAGTGTACATCATGTCTGGGTTCAATGTCGTAGCATCCTCAAGTACGTTCCGTGCTACACGACATTCGTACAAGCTGAACTTTCAATATCAAACTCGGATAGCGCGGGCTGACGACGACGGCTCCATACACCAATTCAGATTTGAATTTGTTCCCGCTGTGAAGATCATATCCGGGGAGTTAGATCAAAACATCTTAGTTGACGTAATTGGTCGTGTTTTCAATATGTCTGAGGTGCATGAGTCGTCTTCCAGTGATCCTAACTCGATGCGGGTAACTATCTATATTGAAGACACTGATAAGACGCAGTTGGCAATCACTCTGTGGGGTCAATATGCCAATCAGATTGTCCAATACATGTCAAAAAATTCTGAGAGTGCAGCAATTGTGGTGGCATTTCAATTCTGTAAAATTAAAGAGTACAGCGGTACACGTTCGTTGTCTAACTCTATGTATGCTACTCGGGTTATGATTAACTCTGACATAGAGGAGATACGACAGTTCCATCAAGGGCTGCAGCCTGAAGATCTTACGAGCCCTATGAACCGCACTGGTCATATCACTATGACAACCACTACTCCTCAAGAGGCCGCATTCGCTGGCTATCCACTTTCATCCGTTGATGAACTATATCAGTCCGGAGATAAAGCTATTGTCTGCATTCTTGCTAATGTAATACAGGTTAATAAGGATAGGGGTTGGTTTTACAATGCATGCAAAAAATGTGGAAAGAAGGTGGATCCTGATGGTCCTATATTCTGGTGTCACAGTTGCAAGGGTTTGGTTAATCAGGCAACTATTAAGTATAGAGTTGAGCTCATGGTTCTGGATGAGTCAAATTCGGCCAACGTGACTATATTTGATCGTGATGTTTTTAATATTGTTGGGTTGCAGGCACCGCAACTCCATGACGAGCACTCAAAGGGCATGCTTGTGGATGCCAATCATACAGTCAACTGGCCAGTTAAGCTTGATTCGTTTGTGGGACAAACATTCGTCTTTAAAGTTGCGGTTGTGAAATCCCAATGGAATGATTTCACATCTTTTACTGTGCAACGTATGACCAGTGATCCTTCAATAATTGATAAGTTCACTAGATATCGTCTTGCTAAGGTTGATCTTAACGCTACGGACGGCAATTTGATTACAGCTGACAAGGCTATGACATCACCCATTATCGACCTGGAGGGTCGTAGGCTGACGTTTACAGACGATGCTAATTCACCTTCCACCGCAACGCTCAGTTCTGGCAAGAGGTCTATAGATGAAGCTTCTTATGAGGGCCATTCATCAAGTGAAGCGGCAAAACAATTGGTCAtgccaaaaaagaaaatcaagatcgagaaaaattga 1572 0.4198 MEQKFDAVNDINRSRSNWTIKIRITRLWESPPYPKTCPDNTIDMVLCDKDGSKIAASVKSVFANKFKNNLKEGAVYIMSGFNVVASSSTFRATRHSYKLNFQYQTRIARADDDGSIHQFRFEFVPAVKIISGELDQNILVDVIGRVFNMSEVHESSSSDPNSMRVTIYIEDTDKTQLAITLWGQYANQIVQYMSKNSESAAIVVAFQFCKIKEYSGTRSLSNSMYATRVMINSDIEEIRQFHQGLQPEDLTSPMNRTGHITMTTTTPQEAAFAGYPLSSVDELYQSGDKAIVCILANVIQVNKDRGWFYNACKKCGKKVDPDGPIFWCHSCKGLVNQATIKYRVELMVLDESNSANVTIFDRDVFNIVGLQAPQLHDEHSKGMLVDANHTVNWPVKLDSFVGQTFVFKVAVVKSQWNDFTSFTVQRMTSDPSIIDKFTRYRLAKVDLNATDGNLITADKAMTSPIIDLEGRRLTFTDDANSPSTATLSSGKRSIDEASYEGHSSSEAAKQLVMPKKKIKIEKN 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2991 523 MobiDBLite consensus disorder prediction 479 493 - -
Sto6g2991 523 CDD RPA1_DBD_C 286 455 IPR013955 -
Sto6g2991 523 PANTHER BNAC01G35430D PROTEIN 295 453 - -
Sto6g2991 523 PANTHER BNAC01G35430D PROTEIN 9 171 - -
Sto6g2991 523 SUPERFAMILY Nucleic acid-binding proteins 4 118 IPR012340 -
Sto6g2991 523 CDD RPA1_DBD_A_like 19 107 - -
Sto6g2991 523 Gene3D - 114 251 IPR012340 -
Sto6g2991 523 Gene3D - 6 113 IPR012340 -
Sto6g2991 523 PANTHER REPLICATION FACTOR A 1, RFA1 9 171 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto6g2991 523 PANTHER REPLICATION FACTOR A 1, RFA1 295 453 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto6g2991 523 Gene3D - 274 446 IPR012340 -
Sto6g2991 523 SUPERFAMILY Nucleic acid-binding proteins 283 425 IPR012340 -
Sto6g2991 523 Pfam Domain of unknown function DUF223 44 139 IPR003871 -
Sto6g2991 523 SUPERFAMILY Nucleic acid-binding proteins 121 245 IPR012340 -
Sto6g2991 523 MobiDBLite consensus disorder prediction 479 512 - -
Sto6g2991 523 CDD RPA1_DBD_B_like 141 241 - -
Sto6g2991 523 Pfam Replication factor-A C terminal domain 296 428 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2991 Sto-Chr6 37045765 37047989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2991 1 428 Core DNA Replication Machinery Family AT5G08020 22.779 4.62e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2991 - - bvg:104885244 237.269