Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2989 ATGCCTGTAGTTTCAGAGCAAAGCCAAGCCTTAAACAAGGAGATGGGGAAAATGAGAAAACACAGTGAAGGAGAAAACATTGAATGGGAAGAAGCAGCAGCAATGGCGGCTGCTCTTATTGGGGCTCGAAGGACAGGAAGAAAGCGATTCATTGGGGTTCGCCAGAGGCCATCAGGGAGATGGGTGGCTGAGATCAAAGACACAATTCAGAATATCAGAGTCTGGTTAGGCACTTACGACACAGAGGAAGAAGCTGCAAGAGCATATGATGAAGCAGCTTGCTTGCTTCGTGGAGCCAACACACGCAGAAACTTCTGgcattcttcttctcctcctgcAAATCCAGTTCTTCCCAAAAAGATCGCTAATCTCATCCTCCTTAGGCTCAAAGCTAGAGACCATAATAATATTGCCTCCCCTGCTTCTGAAGTCGCTCATAATTTTCCCAGTAACCAGACAAAAGCAGAGTTAGAACCAAAGCCACAATTTGAGGATTTTCTAGAGGGCTCGGAGAATGGGATTCTTATCAATGGCGCCAATTTTAAATATGTTGACACAACCAATTATGGTCGTGAGGGTGATGATGAGATTTgtaagaagaaaatgaatttgAATGTGGAAGACAATAAGATAACGAGCGAAAAAGCTAATCTCATCCTTCTTAGGCTCAAAGCAGCTAGAAACAACAATCTTACCTCCGCTTCGGAATTCACTCATCTTCACAGTAACCAAACAGCGTTAAAACTAGAACCAGAACCTCAATTCGACGATCTTCTCGACGTACCGGAGAACGAGTATTTCACAAATGCCGCCAATTTGGATGAATCACTCTTCAACGAAGAAAACCGGGGGAAGAAATTGAAGTCGGAAGAGGAGGAGAACATTGAGATTAAGAGCGAAAAAGTAGGGTTGGATGTGGAATCTGATTTAGGGGTGATTGATTTCCAGTTCGTGGATAGCTTGGGATCGATTTGTCGATCTTCATCTTGTTCATTTGAGATGGCAGAGGAGATGATGGGTCAAATGGAGAAAGAAGAATATGAATACGAATACGAAGAGGGGAATGATGAGGCATCGTTGCTCCGAGAAACCCTAAGAATGAAGTATGAACGTAAATTCTCGGCTTGTCTCTATACCTTCAGTGGGGTTTCCGAGTGTTTGAGGCTCAAATTTGGATCGCAAAATTCAAAGGAATTGGAAGATTTCgaatcatcttcatcttcaatcCATTAG 1233 0.4128 MPVVSEQSQALNKEMGKMRKHSEGENIEWEEAAAMAAALIGARRTGRKRFIGVRQRPSGRWVAEIKDTIQNIRVWLGTYDTEEEAARAYDEAACLLRGANTRRNFWHSSSPPANPVLPKKIANLILLRLKARDHNNIASPASEVAHNFPSNQTKAELEPKPQFEDFLEGSENGILINGANFKYVDTTNYGREGDDEICKKKMNLNVEDNKITSEKANLILLRLKAARNNNLTSASEFTHLHSNQTALKLEPEPQFDDLLDVPENEYFTNAANLDESLFNEENRGKKLKSEEEENIEIKSEKVGLDVESDLGVIDFQFVDSLGSICRSSSCSFEMAEEMMGQMEKEEYEYEYEEGNDEASLLRETLRMKYERKFSACLYTFSGVSECLRLKFGSQNSKELEDFESSSSSIH 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2989 410 CDD AP2 48 105 IPR001471 GO:0003700|GO:0006355
Sto6g2989 410 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Sto6g2989 410 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Sto6g2989 410 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Sto6g2989 410 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Sto6g2989 410 Coils Coil 344 364 - -
Sto6g2989 410 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Sto6g2989 410 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 187 - -
Sto6g2989 410 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 212 402 - -
Sto6g2989 410 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Sto6g2989 410 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Sto6g2989 410 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 212 402 - -
Sto6g2989 410 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 17 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2989 Sto-Chr6 37031553 37033029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2989 47 125 AP2-EREBP Transcription Factor Family AT5G19790 67.089 2.86e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto6g2989 AP2 5.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2989 K09286 - fve:101315370 197.978