Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2988 atgGACGAGGCAGACGAGTCCAATGCTCACAACAAGTTCATATCCAAAAGAAGAAGCAGCTTCAGCGCCGGAGGGCCTAACAACTCTCGTGACCACCATCATCGCTATcactatCTCTTACAACAATATTCGACTCAGTTCGGATTCTGCAACCACAATAACGAGTATCAGAGGTACTACTGCCCggctcttcttcctcttccttctcttaTTCCTCTCCAACTAGCTCTCACGCCTCCCTGCCCTCAAAACCACGCCCTCAAATCAAAAACCCATTCTCACAAATCTCCATGCAAGCTCAATAATTCGTCTCCTTTCGCTGCCTCGTCGGATAACAAGGTCTCTGAGAGTACCGTTGCTCATGCTGCTAAGGGGCTTCAACAGCAAGCGAAGGCATCCATTAATGGAGATGATGGGAAGAGACTCACGCTTGCAAAAAAACCACAGGCACTAATTGCTGCAAGGAGGCCAGACTCTGGTGGCAAAGAGGGTACTGTGATCTCTCTTCTTGCCAACCACTTTCTAGTGCAATTTGATTCATCACAGAAACTATACCATTACAATGTTGAAATTACTCCTAATCCCTCCAAGCAAGTGGCTCGAGCAATCAAACAAAAGTTGGTTGACAGCAATTCTGCTGTGCTCTCTGGTGCTTTTCCGGCATATGATGGGCAAAAGAATCTCTACAGCTCAGTTGAATTCCAAAATGACAAGCTTGAGTTCTACATAAGCCTGCCAATCCCAACAAGCAAGTTGTCATTACCTTGTAAAGAAATGTGTGACTTGAAAGAGAAGCATGAACAGCTTAAGCTGTTCCGGATCAATATCAAACTAGTCTCTAAGATTAATGGGAAGGAATTGGCAAACTACTTGAGCAAAGAGGGGGATGATTGGATTCCTCTTCCACAGGACTATCTCCATGCTTTGGATGTAGTTCTAAGGGAGAGTCCTACTGAGAAGTGTATTCCTGCAGGGAGGTCCTTCTATTCAACTTCAATGGGAAGAACCAAAGAGATTGGAGGAGGAGCTGTTGGATTGAGAGGGTTCTTTCAGAGTCTTAGACCAACCCAACAAGGACTCGCCCTCAATGTTGATTTCTCTGTTACTGCTTTTCATGAGAGCATAGGAGTGATTCTGTATTTGCAGAAGCGTCTTGAGTTTCTTCGAGATCTTTCGCAAAGAAAGACAATGAGTTTGACTGGTGAAGAGAGGAAGGAAGTGGAGAAGGCATTGAAGAACATCAGGGTCTTTGTTTGCCATAGAGAAACTGTACAGAGATACCGTGTCTATGGCTTAACTGAGGAGACTACTGAAAATCTTTGGTTTGCTGATAGGGATGGAAAGAATCTAAGGCTCATGAGCTACTTTAAAGATCACTATAACTATGACATACAGTTTAGCAAATTGCCATGCTTGCAGATCAGTAGGAGTAAACCATGTTATCTCCCTATGGAGCTTTGTGTAATTTGTGAAGGCCAGAAGTTCCTCGGAAAGCTATCTGATGATCAGACAGCAAGAATACTCAAGATGGGCTGCCAAAGACCGAGAGAACGAAAAGCCATCATTGAAGGAGTCATGAGAGGGACGGTTGGACCAACCAGTGGCAACCAGGAAGGAGAATTCAAACTCCAAGTGTCAAGAGAAATGACTCGTTTGACTGGGAGAATTCTTCACCCTCCCAAGCTAAAGCTTGGAGATGGAGGTCATGTGACAAAGCTAATTCCTTCACGTCATGACCGCCAGTGGAACCTTCTGGATGGTCATGTCTTTGAAGGCACTAAAATTGAAAGATGGGCACTAATAGGCTTTGGTGGTACACCTGAGCAGAAGTCCAACATCCCTAGATTTATAAACCAGCTGTCTCAAAGGTGTGAAGAAATGGGCATTTTTCTTAATAAGAACACAATTACTTGCCCCTATTTTGAATCATCTCAGGTGCTTAATAATGTCTCCCTTCTGGAATCAAAGCTCAAGAAAATCCAGAGAGCTGCCTCAAACAATCTCCAGCTGCTTATTTGTATTATGGAGAGAAAACACAAAGGGTATGCTGACCTGAAACGAATTGCAGAGACAAGTATTGGGGTTATGAGCCAATGCTGCTTGTACCCAAATCTCAGCAAGTTAAGTTCACAATTTTTGGCTAATTTGGCCCTCAAAATCAATGCCAAAGTTGGTGGGTGCACAGTTGCCCTGTACAATTCACTGCCCTCTCAAATTCCACGGCTCTTTCAGCACGATGAGCCGGTTATATTTATGGGTGCGGATGTAACACATCCTCATCCGCTTGATGATCATAGTCCTTCTGTTGCTGCTGTTGTTGGTAGCATGAACTGGCCTACTGCAAACAAATATATTTCAAGAATAAGGTCTCAGACGCATCGACAAGAAATCATCCAGGATCTTGGTGCAATGGTGAAGGAGTTGTTAGATGATTTTCATCAGGAAGTAAACAAACTCCCCAGGAGAATAATTTTCTTCAGAGATGGGGTCAGTGAAACCCAGTTCTATAAGGTGCTGCAGGAGGAACTGCAATCCATCAAAGGTGCATGTTCCAGATTTTCGGGTTATAAACCTTTAATTACTTTTGCTGTAGTACAGAAGAGGCATCACACAAGATTGTTTCCCTTTGAAACCCATCAATCTTCCACTCAAAACCAGTTCTGTTATGAGAATATTCCCCCAGGGACTGTGGTTGATTCTGTGATCACTCATCCAAAGGAATTTGATTTCTATCTTTGTAGCCACTGGGGTATGAAAGGAACAAGCAGGCCAACACATTACCATGTTTTGTGGGATGAAAACCAGTTTACTTCTGACGAACTTCAGAAACTGGTTTACAACTTATGCTTTACTTTTGTTAGGTGCACCAAGCCAATTTCTTTGGTTCCTCCTGCCTATTATGCACATTTAGCTGCGTACAGAGGCCGACTTTACCTCGATCGATCAGAATCCTTGGCTCTATTCAAAAGTTCCTCTACATTATCCAGAGCTGCACCTCCAAAGACAGCACCTTTACCAAAACTTAGTGAAAACATCAAGAAGCTCATGTTCTACTGCTAG 3060 0.4304 MDEADESNAHNKFISKRRSSFSAGGPNNSRDHHHRYHYLLQQYSTQFGFCNHNNEYQRYYCPALLPLPSLIPLQLALTPPCPQNHALKSKTHSHKSPCKLNNSSPFAASSDNKVSESTVAHAAKGLQQQAKASINGDDGKRLTLAKKPQALIAARRPDSGGKEGTVISLLANHFLVQFDSSQKLYHYNVEITPNPSKQVARAIKQKLVDSNSAVLSGAFPAYDGQKNLYSSVEFQNDKLEFYISLPIPTSKLSLPCKEMCDLKEKHEQLKLFRINIKLVSKINGKELANYLSKEGDDWIPLPQDYLHALDVVLRESPTEKCIPAGRSFYSTSMGRTKEIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVILYLQKRLEFLRDLSQRKTMSLTGEERKEVEKALKNIRVFVCHRETVQRYRVYGLTEETTENLWFADRDGKNLRLMSYFKDHYNYDIQFSKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTARILKMGCQRPRERKAIIEGVMRGTVGPTSGNQEGEFKLQVSREMTRLTGRILHPPKLKLGDGGHVTKLIPSRHDRQWNLLDGHVFEGTKIERWALIGFGGTPEQKSNIPRFINQLSQRCEEMGIFLNKNTITCPYFESSQVLNNVSLLESKLKKIQRAASNNLQLLICIMERKHKGYADLKRIAETSIGVMSQCCLYPNLSKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFQHDEPVIFMGADVTHPHPLDDHSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIQDLGAMVKELLDDFHQEVNKLPRRIIFFRDGVSETQFYKVLQEELQSIKGACSRFSGYKPLITFAVVQKRHHTRLFPFETHQSSTQNQFCYENIPPGTVVDSVITHPKEFDFYLCSHWGMKGTSRPTHYHVLWDENQFTSDELQKLVYNLCFTFVRCTKPISLVPPAYYAHLAAYRGRLYLDRSESLALFKSSSTLSRAAPPKTAPLPKLSENIKKLMFYC 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2988 1019 SMART PAZ_2_a_3 382 522 IPR003100 GO:0005515
Sto6g2988 1019 PANTHER PROTEIN ARGONAUTE 7 106 1018 - -
Sto6g2988 1019 SUPERFAMILY Ribonuclease H-like 655 980 IPR012337 -
Sto6g2988 1019 SUPERFAMILY PAZ domain 369 527 IPR036085 GO:0005515
Sto6g2988 1019 SMART Piwi_a_2 670 980 IPR003165 GO:0003676
Sto6g2988 1019 Pfam PAZ domain 385 507 IPR003100 GO:0005515
Sto6g2988 1019 Gene3D - 556 732 - -
Sto6g2988 1019 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 106 1018 - -
Sto6g2988 1019 Gene3D - 742 1019 IPR036397 GO:0003676
Sto6g2988 1019 CDD Piwi_ago-like 540 979 IPR045246 -
Sto6g2988 1019 Pfam N-terminal domain of argonaute 167 313 IPR032474 -
Sto6g2988 1019 Pfam Piwi domain 671 976 IPR003165 GO:0003676
Sto6g2988 1019 Pfam Argonaute linker 1 domain 324 372 IPR014811 -
Sto6g2988 1019 Gene3D paz domain 368 495 - -
Sto6g2988 1019 ProSiteProfiles PAZ domain profile. 382 491 IPR003100 GO:0005515
Sto6g2988 1019 SMART DUF1785_2 322 374 IPR014811 -
Sto6g2988 1019 CDD PAZ_argonaute_like 385 490 - -
Sto6g2988 1019 ProSiteProfiles Piwi domain profile. 670 980 IPR003165 GO:0003676
Sto6g2988 1019 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2988 Sto-Chr6 37017363 37020963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2988 161 1019 Eukaryotic Initiation Factors Gene Family AT1G48410 41.006 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2988 K11593 - gmx:100796107 1730.3