Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2940 ATGGCAGTAGCAGATGATACTCCAACTCCACAGATGGTTGGGAATGCTTTTGTGGAGCAGTATTACTCTATTCTTCATCAACAACCACACCTAGTTCACAGATTTTACCATGAGTCTAGTGTACTTAGCCGACCTGAAGAAGATGGCAGTATGTCCCTGGTGACCACTATTGATGGCATTAACAAGAAGATCCTCTCTCTGGATTACACAAGCTTTACAGTGGAGATTTTGAGTGCTGATGCTCAGCAATCCTACAAGGATGGAGTAATGGTTGTGGTGACTGGCTGCTTAACTGGAAATGACAATATGAAAAGGAAGTTTACTCAGTCATTTTTCCTAGCCCCACAAAATGACAAGGCCTACTTTGTTCTGAAtgatatatttagatatattgAGCATAAGTCTGTTGAAGTTCATTCTGCTCCTGCAAATGATGCTGAGGAAATTGCTCCACCAGCATCTTTTACTCCAGAGCCAGAGCCCACTCATGTTCCTGAAAGCATTCCACCTAGTCAAACTGCTGTTGTGGACACTGACACTAATGTCAGCGAAGAAGTGGATCAACCATTGGATAATGGGAAAATATCAGTAACTGAAGAGGTGGTGGCATCTGATATTGTGAAAGAGCCAATTCAGCAGGAAAGTCACCCCAACACTGAGAAGACTTCTTCTAATGCTCAGGAGGATACTCCGAAGAAGTCCTTTGCGTCGATTGTGAATGCATTGAAAGATAATGGTGCTCCATTCCATATAAGGTCTTCCCCAGCAAAAACTGTAGAGCAGCCACGTGTACCTACCATTCCGGCACCCGAAGCACCAGCTCCCAGCAGTAGCCTTGCACCGGAAaagaataataatgataatgcaGGTAAGGCTTATGCAATATTTGTTGCAAATTTGCCAATGAATGCAACAGTAGAACAGCTTGAACAGGAATTCAAGAAATTTGGACCCATTAAACATGATGGCATTCAAGTTAGAAGCAACAAGCAACAGGGATCCTGTTTTGGTTTTGTGGAATTTGAATCTGCTAGTTCAATGCAAAGCGCACTAGAGGCTTCCCCTATCATGTTGGACGGTCGCAGACTTTCCATTGAAGAGAGGCGAGCTAATAATGATAGAGTCCGATATTCATCTGGACGCGGTGGATTCCGAAATGACAACTTCAGGGGCCGTGGCAACTTTGGTGGCCGTGGCTACGTAAGAAATGATGGTGAGAAACGTGGTGAGTTCTCAGGCCGCCCTCGAGGCAATGGTGGACGGAATGGAGAAAGTTTTGGAAGGGCTTATCAGAATGGAGGTAGAGTTGCCCGTCAAGAAGTGAAAGTGCAATAA 1335 0.4375 MAVADDTPTPQMVGNAFVEQYYSILHQQPHLVHRFYHESSVLSRPEEDGSMSLVTTIDGINKKILSLDYTSFTVEILSADAQQSYKDGVMVVVTGCLTGNDNMKRKFTQSFFLAPQNDKAYFVLNDIFRYIEHKSVEVHSAPANDAEEIAPPASFTPEPEPTHVPESIPPSQTAVVDTDTNVSEEVDQPLDNGKISVTEEVVASDIVKEPIQQESHPNTEKTSSNAQEDTPKKSFASIVNALKDNGAPFHIRSSPAKTVEQPRVPTIPAPEAPAPSSSLAPEKNNNDNAGKAYAIFVANLPMNATVEQLEQEFKKFGPIKHDGIQVRSNKQQGSCFGFVEFESASSMQSALEASPIMLDGRRLSIEERRANNDRVRYSSGRGGFRNDNFRGRGNFGGRGYVRNDGEKRGEFSGRPRGNGGRNGESFGRAYQNGGRVARQEVKVQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2940 444 SMART rrm1_1 294 366 IPR000504 GO:0003723
Sto6g2940 444 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 4 432 IPR039539 -
Sto6g2940 444 PANTHER BNAA02G14660D PROTEIN 4 432 - -
Sto6g2940 444 MobiDBLite consensus disorder prediction 148 174 - -
Sto6g2940 444 CDD RRM_SF 295 366 - -
Sto6g2940 444 MobiDBLite consensus disorder prediction 204 231 - -
Sto6g2940 444 Pfam Nuclear transport factor 2 (NTF2) domain 13 130 IPR002075 -
Sto6g2940 444 CDD NTF2 9 132 IPR018222 -
Sto6g2940 444 Gene3D - 280 408 IPR012677 -
Sto6g2940 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 382 IPR000504 GO:0003723
Sto6g2940 444 MobiDBLite consensus disorder prediction 246 286 - -
Sto6g2940 444 Gene3D - 2 136 - -
Sto6g2940 444 SUPERFAMILY NTF2-like 9 131 IPR032710 -
Sto6g2940 444 SUPERFAMILY RNA-binding domain, RBD 288 399 IPR035979 GO:0003676
Sto6g2940 444 MobiDBLite consensus disorder prediction 388 444 - -
Sto6g2940 444 MobiDBLite consensus disorder prediction 211 231 - -
Sto6g2940 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 363 IPR000504 GO:0003723
Sto6g2940 444 ProSiteProfiles Nuclear transport factor 2 domain profile. 13 130 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2940 Sto-Chr6 36610510 36613837 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2940 K24983 - gmx:100805610 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2940 6 36610510 36613837 Sto6g2940 6 36610510 36613837 ECH