Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2938 TTGCAGACAAGTTTGGTGCGAGCAGTTGTACGGGAATGTGGGGCACATTTGACGATTATCAGTCCTCATTCTGTTCATAGAGCACATGCTGGGGAAAGTGAGAGAATTCTCCGTGAGGCTTTTTCAGAAGCATCATCCCATGTGACTTTGGGCAAGCCTTCAGTTATCTTTATTGATGAAATAGATGCACTCTGTCCAAGGCGTAATTCCAGAAGGGAGCAAGATGTTCGAGTTGCATCCCAGCTCTTTACACTGATGGACTCAAATAAACCATCCTCATCTATGCCTGGAATTGTTGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCCTTAAGAAGGTCTGGACGTTTTGATGCTGAAGTTGAAGTTACTGTGCCAAGTGAAGAGGAGCGCTTTCAAATTCTTAAGCTGTACGCAAAGAAGATTCCCTTGGATCCCAGTGTTGACTTAAAAATGATTGCTGCATCTTGCAATGGATATGTCGGGGCTGATTTAGAGGCTTTGTGTCGTGAAGCTACCATGATTGCAGTTAAAAGGTCCTcagatgaaaatggaaatacTAGTAATTTAAGCTTATCGACGGAAGATTGGAAGAATGCAAGATCTATTGTTGGTCCAAGCATAACAAGAGGTGTTACTGTTGAAATTCCTAAAGTAACTTGGGAAGATATTGGGggattaaaagaattaaagAAAAAGCTCCAGCAAGCTGTTGAGTGGCCTATCAAGCATTCTGATGCATTTTCAAGAATGGGCATTTCTCCTGTACGTGGAATTCTTTTGCATGGACCTCCAGGATGTTCCAAGACAACCCTCTCCAAAGCTGTAGCACATGCTGCCCAagcttctttcttttccttgagTGGTGCAGAATTGTATTCAATGTATGTTGGAGAGGGAGAAGCTTTGCTTCGTAACACATTCCAGAGAGCGCGCCTTGCAGCTCCCAGTATACTATTTTTTGATGAAGCTGACGTAGTAGCTGCCAAAAGAGGTGATGCTTCAAGCAATAGTGCTACAGTTGGAGAGAGGCTTTTATCCACTCTCCTGACTGAGATGGATGGCTTAGAAGAAGCTAAAGGAATTCTCGTTTTGGCAGCCACAAACCGCCCTTATGCAATTGATGCTGCGCTTATGCGTCCTGGACGTTTTGATCTGGTGCTGTATGTGCCACCTCCTGATTTGGAAGCTCGATACGAGATACTCAATGTTCACACACGTAACATGAAACTAGGGAATGATGTCAATCTCAGGAGAGTAGCAGAAGATACCGAACTCTTCACGGGTGCCGAACTGGAAGGTTTATGCCGGGAAGCTGGAATTGTTGCTCTGAGGGAAAACATATCTGCCACTGTCGTGTGCGATTGCCATTTCCAGGTTGTGAGGAATTCTCTAAATCCAGCATTAACAAAAGAAGATATTGATTCATACTCATCTTTTATGAAGACCTCATCTTCACCATCTTCTGAGCATCATCTCAAATCAAGTATGAAATTGGATCAGAAGAAAGGGAAATTGTTATGTTCTTCTTCTTTGGTTAAACTTGGTGTTGTTGGATGTATATTGCTTGCAGCTACCAAATTCTTTGTCATGCATAGAGAACAATCTGTATATGAAGTAGCTATGACCTGA 1641 0.4174 LQTSLVRAVVRECGAHLTIISPHSVHRAHAGESERILREAFSEASSHVTLGKPSVIFIDEIDALCPRRNSRREQDVRVASQLFTLMDSNKPSSSMPGIVVVASTNRVDAIDPALRRSGRFDAEVEVTVPSEEERFQILKLYAKKIPLDPSVDLKMIAASCNGYVGADLEALCREATMIAVKRSSDENGNTSNLSLSTEDWKNARSIVGPSITRGVTVEIPKVTWEDIGGLKELKKKLQQAVEWPIKHSDAFSRMGISPVRGILLHGPPGCSKTTLSKAVAHAAQASFFSLSGAELYSMYVGEGEALLRNTFQRARLAAPSILFFDEADVVAAKRGDASSNSATVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARYEILNVHTRNMKLGNDVNLRRVAEDTELFTGAELEGLCREAGIVALRENISATVVCDCHFQVVRNSLNPALTKEDIDSYSSFMKTSSSPSSEHHLKSSMKLDQKKGKLLCSSSLVKLGVVGCILLAATKFFVMHREQSVYEVAMT 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2938 546 CDD AAA 228 395 - -
Sto6g2938 546 SMART AAA_5 258 397 IPR003593 -
Sto6g2938 546 SMART AAA_5 3 130 IPR003593 -
Sto6g2938 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 492 IPR027417 -
Sto6g2938 546 ProSitePatterns AAA-protein family signature. 365 383 IPR003960 GO:0005524|GO:0016887
Sto6g2938 546 Gene3D - 2 124 IPR027417 -
Sto6g2938 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 186 IPR027417 -
Sto6g2938 546 Gene3D - 129 211 - -
Sto6g2938 546 Gene3D - 397 479 - -
Sto6g2938 546 Pfam AAA+ lid domain 150 188 IPR041569 -
Sto6g2938 546 Pfam AAA+ lid domain 417 462 IPR041569 -
Sto6g2938 546 Gene3D - 212 396 IPR027417 -
Sto6g2938 546 PANTHER AAA-FAMILY ATPASE 3 467 - -
Sto6g2938 546 CDD AAA 3 126 - -
Sto6g2938 546 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG B 3 467 - -
Sto6g2938 546 Pfam ATPase family associated with various cellular activities (AAA) 262 394 IPR003959 GO:0005524|GO:0016887
Sto6g2938 546 Pfam ATPase family associated with various cellular activities (AAA) 3 126 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2938 Sto-Chr6 36589494 36595258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2938 193 470 Calmodulin-binding Proteins AT3G56690 46.403 1.18e-81 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2938 - - gmx:100814288 860.522