Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2928 ATGGCGATGCAAGGTGTGCAGAAGAACACACTGTACGTGGGTGGGCTAGCGGATGAAGTCAACGAGTCCATTCTTCACGCTACCTTCATACCCTTTGGGGACATCAAGGACGTCAAGACGCCGCTCGACCAGGCCACCCAGAAGCACCGTTCCTTCGGCTTCGTCACATTCTTGGAGAGAGAGGACGCCGCCGCCGCCATGGACAATATGGACGGCGCTGAGCTTTATGGCCGTGTGCTCACCGTCAACTACGCCCTGCCGGAGAAAATTAAGGGTGGTGAACAGGGCTGGGCTGCTCAGCCAGTTTGGGCGGATGCGGATACTTGGTTTGAGCGACAGCAGCAAGAAGAGGAAATGCGCCGTATAGAGGCAGAGAATCGAGCTGCAATGCAGGCTGCAGAAGACATACGTAGAAAACAACTAGCCCAAGAGCGAGAAGGTGAAAAGGAAGAGGAAATTGAGATCAAGGATGATCCTATGGCAAAGGCTGAAGCGGAGGTTCTGTAA 507 0.5424 MAMQGVQKNTLYVGGLADEVNESILHATFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDAAAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAQPVWADADTWFERQQQEEEMRRIEAENRAAMQAAEDIRRKQLAQEREGEKEEEIEIKDDPMAKAEAEVL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2928 168 CDD RRM_PPIE 11 83 IPR034168 GO:0003723
Sto6g2928 168 SMART rrm1_1 10 83 IPR000504 GO:0003723
Sto6g2928 168 Gene3D - 2 154 IPR012677 -
Sto6g2928 168 PANTHER TRANSFORMER-2-RELATED 4 168 - -
Sto6g2928 168 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Sto6g2928 168 Coils Coil 112 139 - -
Sto6g2928 168 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 4 168 - -
Sto6g2928 168 SUPERFAMILY RNA-binding domain, RBD 6 96 IPR035979 GO:0003676
Sto6g2928 168 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 80 IPR000504 GO:0003723
Sto6g2928 168 MobiDBLite consensus disorder prediction 131 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2928 Sto-Chr6 36529037 36530910 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2928 9 87 Eukaryotic Initiation Factors Gene Family AT3G11400 36.709 1.03e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2928 - K09564 gmx:100809447 284.263