Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2920 ATGGAATCTTGGAGTTACCCCTCAGAAGAGAAAGGCTATTTGCTTTCTGATGAGATGGATTTTTCGTTCGAAGCTTTTATGAGAAGCAGAAAAGCGTTGGTTGAGTGGGACAACAAAGCTGAAGCCTCCTGCTGTAACTTTGAGAAAGATGAGTTTAGTTCAGATGGAGAGGGAGTTAAAAGCATGGAAGTTGTTGATTTGGATTCTTCATGTTATAGTGAAAGAGTGAATTCCTCTACTCATGTTGTAGCTATGGATTCATGTTTGATGGAGGAAGAATCTAAAAGTCACCATTCATCATTGATTGATTTGAAGCTAGGGAGAATAGCAGATTGTAAAGATGCAAGTAGTGATAAAATTGCAAAGAGAGTTCGCACTTTGGCTTCGACTTCGGCCTCACCTGCTCAGAAACCTGTGTGTCAAGTTTATGGTTGTAATATGGATCTTAGCTCCTCAAAAGAGTACCACAGAAGGCATAAAGTTTGTGATGCTCACTCCAAGACGGCCAAAGTTATTGTGAATGGCATTGAGCAGAGGTTTTGTCAGCAGTGTAGTAGGTTCCACTTGCTCACTGAGTTCGATGAGGGTAAGCGCAGCTGTCGCAGACGCCTAGCAGGACACAATGAACGCCGAAGGAAGCCTCAGTTTGATTATGTGTCTGGTAAACCACACAAGATGCTTCAGACATATCAAGGTACCAAATTTCTGGGCGCTTCATTCCAGAAGATGCCTCAGTTTGCCTTTCAAGACATGTTTGGGAGTAGCATCATTTACCCTGCAAAATATGAACAAACCAATCACAGTGAACATATAACACATGGTCAGGAGGAGTCATCTAGAGTCTCAAACACCAGCTGTGCTCTCTCTCTTCTGTCATGCCACGCAGCAGGAAACCTGGTAGCTGGTTCTCTTGATTTCCATGGCGTCTCCACAAACCAACACGACGAAAAAGTTTCTCAAATGCCTCTGGGGATAAACTCTCTGGATAAATACGTACATAACGAGTCTTCTTCGTGTAGGGCTAACTCGATAGAAGCTATCAAGACTGGATCCATAATGCTTTCTGATGCTGATCATGCTGCTCGTCTTCTAATTGACAGCAATGATATGTGCCAACCATCATCTGACGTATCAAATGTAAAACATAGTCTTTTCCCCGAAGATGGAGCCACCGTTGATCTCTTCCAATTGTCATCTCATCTTCAAAGGGTGGAGCAACAAAGAAATTCATTTCTTTAG 1239 0.427 MESWSYPSEEKGYLLSDEMDFSFEAFMRSRKALVEWDNKAEASCCNFEKDEFSSDGEGVKSMEVVDLDSSCYSERVNSSTHVVAMDSCLMEEESKSHHSSLIDLKLGRIADCKDASSDKIAKRVRTLASTSASPAQKPVCQVYGCNMDLSSSKEYHRRHKVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLTEFDEGKRSCRRRLAGHNERRRKPQFDYVSGKPHKMLQTYQGTKFLGASFQKMPQFAFQDMFGSSIIYPAKYEQTNHSEHITHGQEESSRVSNTSCALSLLSCHAAGNLVAGSLDFHGVSTNQHDEKVSQMPLGINSLDKYVHNESSSCRANSIEAIKTGSIMLSDADHAARLLIDSNDMCQPSSDVSNVKHSLFPEDGATVDLFQLSSHLQRVEQQRNSFL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2920 412 Pfam SBP domain 140 213 IPR004333 GO:0003677
Sto6g2920 412 Gene3D - 130 201 IPR036893 GO:0003677|GO:0005634
Sto6g2920 412 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 276 406 - -
Sto6g2920 412 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 32 277 - -
Sto6g2920 412 ProSiteProfiles Zinc finger SBP-type profile. 137 214 IPR004333 GO:0003677
Sto6g2920 412 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 276 406 IPR044817 GO:0003677
Sto6g2920 412 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 277 IPR044817 GO:0003677
Sto6g2920 412 SUPERFAMILY SBT domain 138 219 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2920 Sto-Chr6 36454099 36458076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2920 102 409 SBP-box Gene Family AT1G69170 39.339 1.58e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto6g2920 SBP 6.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2920 - - gmx:100820149 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2920 6 36454099 36458076 Sto6g2920 6 36454099 36458076 ECH