Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2917 atggggAGAGGTAGGGTTGAGCTGAAGAGGATAGAGAACAAGATCAATATGCAAGTGACATTCTCAAAGAGAAGAATAGGTTTGGTGAAGAAGGCACATGAGATCTCTGTGCTTTGTGATGCTGAGgttaaaattgacaaaaataaggAAACTTTTGTCATTAAGATAAACATCCTTAACCTTGAATTACCAAATACCTATCCCTATACCCTTCTTCCTGTTTCCTCTTTGAGCCGCCGCGACTCAGACACAAAAACAGGCAAGATAGAGAGCAAATTGGAGAACACAAAACCGTCGGAGAAAGACGAAACCAACGGAGAAGTCCAACGAAGCGAAGCTTATCACCGGAAACTTCGAAAGGAGGCCATCGTCGTATTGTTGAGCTTCGGCCTTTACCTCTCACAACGCCGCCTGTCGCAGCTAGCAAGTGTTGGTTCATTAACGACGTCGCTCCAAGCTTGGAAGCTAGCAGGGATTGTCTTGCAAGGTACTTTGCTTACACTGAATTTCTTTGAGTTTTTGGAGGCTCTGAGGTTGGTATTTGGTGGTGTTATTGTATATCCTCTTTCCGCTGGTTAG 579 0.4266 MGRGRVELKRIENKINMQVTFSKRRIGLVKKAHEISVLCDAEVKIDKNKETFVIKINILNLELPNTYPYTLLPVSSLSRRDSDTKTGKIESKLENTKPSEKDETNGEVQRSEAYHRKLRKEAIVVLLSFGLYLSQRRLSQLASVGSLTTSLQAWKLAGIVLQGTLLTLNFFEFLEALRLVFGGVIVYPLSAG 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2917 192 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 1 44 - -
Sto6g2917 192 Gene3D - 13 45 IPR036879 GO:0003677|GO:0046983
Sto6g2917 192 MobiDBLite consensus disorder prediction 78 111 - -
Sto6g2917 192 ProSiteProfiles MADS-box domain profile. 1 45 IPR002100 GO:0003677|GO:0046983
Sto6g2917 192 MobiDBLite consensus disorder prediction 81 111 - -
Sto6g2917 192 SMART madsneu2 1 56 IPR002100 GO:0003677|GO:0046983
Sto6g2917 192 SUPERFAMILY SRF-like 1 44 IPR036879 GO:0003677|GO:0046983
Sto6g2917 192 PANTHER MADS BOX PROTEIN 1 44 - -
Sto6g2917 192 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 44 IPR002100 GO:0003677|GO:0046983
Sto6g2917 192 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto6g2917 192 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2917 Sto-Chr6 36390937 36401381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2917 1 45 MADS-box Gene Family AT1G26310 86.667 5.94e-20 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto6g2917 SRF-TF 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2917 K09264 - twl:120002897 83.1889