Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g2916 ATGGAGGTTGATCCAATAGAAACCGTTTCTCAACAGCGCAAGAGAAAGCCCAAGAGAAAAAGAACCCGGGAAGATCCAGAACTAGAACGTCTGAACTCACTGTCGTGGAACCCTGCTCTTCCTGAAAATGATGATCCCTTTTCTTTAGTTGTGGGCTCGAATGAACTTGAAGGAGGTTTTCTTTCACTGGAAGAGATTGATGAAGCTGAGTATGGTTTACAAATTCCTGATCCTGAAGAAGGCAAAAGGAAGAAGCCTAAACAAAAATTGGATTTAAAGAAACAGAAGCAGAGTGAAGTTAAGGGTGCTTGCAATGACGTGGATGAGGTGAAGCATGAAGCAAAAAAGGATGAGGGTGTGAAGACTaaaaagaagcaaaagaaggaaaagaaaaagaaaaaaaaggcagCTGCTGACCTAGTTACTGATTTGAAGGATGATATTGGGGAAGATGACATTGATGAAATGGAATTTTATGCATGGAATGAGTTGAGACTTAATCCTCTGATCATGAAAGCAATATACAAGCTTGGCTTCAAAGAACCCACGCCAATACAGAAAGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTTCAGAGACGGGATCTGGAAAAACACTTGCATTTGGTTTGCCCATTTTGCAACGCATTTTAGAGGAGAGAGAGAAGGCTACAAACATGCTTGAACAAAAGGGTAAAGAACCAGATAAGTATGCTCCTACTGGCGTTCTAAGGGCTCTTATAATTGCTCCTACCAGGGAACTTGCACTTCAGGTCACAGATCATCTGAAAAAAGTAGCCAAGTATATTAATGTTAGGGTGACCCCTATAGTCGGGGGAATTTTAGCAGAAAAACAAGAGAGACTTTTAAAAGCGAGGCCTGAGATTGTTGTTGGGACTCCAGGGAGGTTATGGGAACTTATGTCAGCTGGAGAGAAGCATCTAGTTGAGTTACATTCTTTGTCAttctttgtgcttgatgaagcTGATCGAATGatacaaaatggtcattttaaagAGTTGCAATCAATAATTGACATGCTTCCCATGTCCAAAACTTCTGGCAGTGATATTTCTCAATCTGCAGAAAATTGTACTACAGTTTCAAGCtaccaaagaaagaaaaggcaAACTCTAGTTTTTTCAGCAACTGTTGCACTATCTTCTGATTTTCGCAAGAAGTTAAAGCGTGCttcaacaaaacaaaagcaGTCAGTGTTAGATGGATTTAATTCCATTGAAACTCTTTCTGAGCGTGCAGGAATGAGAGCCAATGCAGCAGTCATTGATCTCACTAGTGCAACAATATTAGCCTCCAAGCTTGAGGAATCATTTATTGAATGCAAGGAAGAAGATAAAGATgcttatttgtattatattttgaCCGTTCATGGACAAGGACGCACAATAGTTTTTTGTACATCAATTGCAGCTCTGCGCCATATCTCATCTCTACTTCGCATTCTCGGCATTAATGCTTGGACTCTTCACGCCCAGATGCAGCAGCGAGCACGTTTAAagGCCATTGATCGCTTTCGTGAAAATGATAACAGCATACTCGTTGCTACTGACGTTGCAGCAAGGGGTCTTGATATTCCTGGTATTAAAACTGTTGTTCACTATCAGCTTCCACATTCAGCAGATgtttaTGTTCATAGAAGTGGAAGAACAGCTAGGGCTTCTGCTGAAGGGTGCAGCATTGCTTTAATCTCACCAAGAGATACCTCGAAGTTCGCTTCATTGTGCAAGTCCTTTTCTAAGGATATTTTTCAGCGATTTCCTTTGGAGAATTCATATATGCCAGAAGTTTTAAAGCGATTGTCTATTGCGCGTCAAATAGACAAAATAGTGCGAAAGGATTCACAGGAAAAAGCTGAGAAGAATTGGTTTGAACGGAATGCTGAATCAGTGGAATTAGTTACGGAAAATTACGACAGTGAGGAGGAAAGAGTGAAGAAATATAAGCAAATGAAGGCTAGCTCTACACAGTTGAAGAAATTGCAGCAGGAGCTAAATGGGCTGCTATCGCGTCCCTTGCAATCAAAAACATTTTCTCATCGTTATTTAGCCGGGGCTGGGGTCACACCTCTCATGCAGGAACAGTTCCAACTGTTAGCCAAGCAAAAGCAAGGTGATCAGCAACGTTCAGGAGTAACTACTAAGGGAAAATTGGTTGTAATTGGTCACGATTGTATCGAAGCACTTCAGGCGCTGCGAAAAGCCGGTGAAGAGGTGCGCATGGATGTTAAGGATATGGTGGGAAAACGAATAAATATGGAGAacttaaaaagaaagagaaaagaggagaaaaaacGTTTGCGTGACCAGCGAAGAAAGCagaaaaagaaactaaaatatGGAGAATGA 2382 0.3871 MEVDPIETVSQQRKRKPKRKRTREDPELERLNSLSWNPALPENDDPFSLVVGSNELEGGFLSLEEIDEAEYGLQIPDPEEGKRKKPKQKLDLKKQKQSEVKGACNDVDEVKHEAKKDEGVKTKKKQKKEKKKKKKAAADLVTDLKDDIGEDDIDEMEFYAWNELRLNPLIMKAIYKLGFKEPTPIQKACIPAAAHQGKDVVGASETGSGKTLAFGLPILQRILEEREKATNMLEQKGKEPDKYAPTGVLRALIIAPTRELALQVTDHLKKVAKYINVRVTPIVGGILAEKQERLLKARPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMIQNGHFKELQSIIDMLPMSKTSGSDISQSAENCTTVSSYQRKKRQTLVFSATVALSSDFRKKLKRASTKQKQSVLDGFNSIETLSERAGMRANAAVIDLTSATILASKLEESFIECKEEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSLLRILGINAWTLHAQMQQRARLKAIDRFRENDNSILVATDVAARGLDIPGIKTVVHYQLPHSADVYVHRSGRTARASAEGCSIALISPRDTSKFASLCKSFSKDIFQRFPLENSYMPEVLKRLSIARQIDKIVRKDSQEKAEKNWFERNAESVELVTENYDSEEERVKKYKQMKASSTQLKKLQQELNGLLSRPLQSKTFSHRYLAGAGVTPLMQEQFQLLAKQKQGDQQRSGVTTKGKLVVIGHDCIEALQALRKAGEEVRMDVKDMVGKRINMENLKRKRKEEKKRLRDQRRKQKKKLKYGE 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g2916 793 Pfam DEAD/DEAH box helicase 183 391 IPR011545 GO:0003676|GO:0005524
Sto6g2916 793 Pfam Helicase conserved C-terminal domain 457 565 IPR001650 -
Sto6g2916 793 PANTHER RNA HELICASE 82 714 - -
Sto6g2916 793 MobiDBLite consensus disorder prediction 772 793 - -
Sto6g2916 793 MobiDBLite consensus disorder prediction 75 98 - -
Sto6g2916 793 CDD DEADc_DDX24 170 435 - -
Sto6g2916 793 MobiDBLite consensus disorder prediction 761 793 - -
Sto6g2916 793 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 82 714 - -
Sto6g2916 793 Coils Coil 219 239 - -
Sto6g2916 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 581 IPR027417 -
Sto6g2916 793 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 330 338 IPR000629 -
Sto6g2916 793 MobiDBLite consensus disorder prediction 115 134 - -
Sto6g2916 793 MobiDBLite consensus disorder prediction 1 51 - -
Sto6g2916 793 Coils Coil 757 793 - -
Sto6g2916 793 MobiDBLite consensus disorder prediction 70 98 - -
Sto6g2916 793 Coils Coil 642 682 - -
Sto6g2916 793 Gene3D - 116 411 IPR027417 -
Sto6g2916 793 SMART helicmild6 485 566 IPR001650 -
Sto6g2916 793 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 191 408 IPR014001 -
Sto6g2916 793 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 445 606 IPR001650 -
Sto6g2916 793 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 159 187 IPR014014 GO:0003724
Sto6g2916 793 CDD SF2_C_DEAD 446 575 - -
Sto6g2916 793 SMART ultradead3 178 418 IPR014001 -
Sto6g2916 793 Gene3D - 437 682 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g2916 Sto-Chr6 36370632 36390261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g2916 160 606 Eukaryotic Initiation Factors Gene Family AT5G11200 29.661 1.40e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g2916 K14805 - gmx:100806018 1144.8